Variant report

Variant	rs7164328
Chromosome Location	chr15:74657282-74657283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr15:74657259-74657450	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAZ	chr15:74657259-74657383	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr15:74657170-74658739	Hela-S3	cervix:	n/a	n/a
4	JUND	chr15:74657273-74657473	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr15:74657255-74657488	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74656941..74659751-chr15:74906408..74907911,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261821	TF binding region
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3809541	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv984091	chr15:74640375-74659005	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv18862	chr15:74642778-74659579	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74654000-74657600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:74654400-74657400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:74656200-74657600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:74656600-74657400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:74656800-74657400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74656800-74657600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr15:74656800-74657600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:74656800-74657600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:74656800-74657600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr15:74657000-74657400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:74657000-74657400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:74657000-74657600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:74657000-74657600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:74657000-74657600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr15:74657000-74657600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr15:74657000-74657600	Enhancers	Osteobl	bone
18	chr15:74657000-74657800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:74657000-74658000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
20	chr15:74657000-74658000	Flanking Active TSS	Hela-S3	cervix
21	chr15:74657000-74658200	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr15:74657200-74657400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr15:74657200-74657400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
24	chr15:74657200-74657400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
25	chr15:74657200-74657600	Active TSS	Placenta	Placenta
26	chr15:74657200-74657600	Enhancers	Ovary	ovary
27	chr15:74657200-74657800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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