Variant report

Variant	rs7164358
Chromosome Location	chr15:41226119-41226120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41224445..41227375-chr15:41302953..41304983,2	K562	blood:
2	chr15:41225668..41227259-chr15:41286163..41288486,2	K562	blood:
3	chr15:41224639..41226841-chr15:41251663..41253494,2	MCF-7	breast:
4	chr15:41225052..41227814-chr15:41277173..41281104,3	K562	blood:
5	chr15:41194927..41205036-chr15:41218861..41227276,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259463	Chromatin interaction
ENSG00000251161	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16971223	0.87[EUR][1000 genomes]
rs28434362	0.87[EUR][1000 genomes]
rs3212278	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923888	0.87[EUR][1000 genomes]
rs4923889	0.86[ASN][1000 genomes]
rs4924515	0.84[EUR][1000 genomes]
rs60237220	0.87[EUR][1000 genomes]
rs6492971	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv904106	chr15:41221067-41259523	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41224200-41226200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
2	chr15:41224400-41226600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:41224400-41231400	Weak transcription	HUVEC	blood vessel
4	chr15:41224600-41226200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:41224600-41226800	Weak transcription	Placenta	Placenta
6	chr15:41224800-41226200	Enhancers	Fetal Thymus	thymus
7	chr15:41224800-41227400	Genic enhancers	Spleen	Spleen
8	chr15:41224800-41229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:41224800-41230800	Enhancers	Liver	Liver
10	chr15:41225000-41226200	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:41225000-41233600	Weak transcription	Esophagus	oesophagus
12	chr15:41225400-41226200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:41225400-41226600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:41225400-41226800	Enhancers	Colonic Mucosa	Colon
15	chr15:41225400-41226800	Weak transcription	Gastric	stomach
16	chr15:41225400-41227200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:41225400-41227200	Genic enhancers	Fetal Intestine Small	intestine
18	chr15:41225400-41228600	Weak transcription	Psoas Muscle	Psoas
19	chr15:41225600-41232400	Weak transcription	Brain Anterior Caudate	brain
20	chr15:41225800-41226200	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr15:41225800-41226200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:41225800-41226400	Enhancers	Stomach Mucosa	stomach
23	chr15:41225800-41231400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:41225800-41231400	Strong transcription	Fetal Stomach	stomach
25	chr15:41226000-41226200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:41226000-41226200	Enhancers	Lung	lung
27	chr15:41226000-41226600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:41226000-41226600	Weak transcription	Left Ventricle	heart
29	chr15:41226000-41226800	Enhancers	Fetal Intestine Large	intestine
30	chr15:41226000-41226800	Weak transcription	Right Ventricle	heart
31	chr15:41226000-41227000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr15:41226000-41227200	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:41226000-41227800	Weak transcription	Right Atrium	heart
34	chr15:41226000-41228600	Enhancers	HepG2	liver
35	chr15:41226000-41230000	Weak transcription	A549	lung
36	chr15:41226000-41232000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr15:41226000-41232200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:41226000-41232600	Weak transcription	Brain Angular Gyrus	brain
39	chr15:41226000-41233000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:41226000-41233400	Weak transcription	Thymus	Thymus

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