Variant report

Variant	rs71646803
Chromosome Location	chr1:240185095-240185096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10926078	0.84[AFR][1000 genomes]
rs10926093	0.82[AMR][1000 genomes]
rs10926095	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10926096	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10926097	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10926098	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10926099	1.00[ASN][1000 genomes]
rs10926100	1.00[ASN][1000 genomes]
rs10926101	1.00[ASN][1000 genomes]
rs10926103	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10926104	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10926105	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12066851	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12069764	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12069765	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12069776	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12075516	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092439	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12092486	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12095464	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12096596	1.00[ASN][1000 genomes]
rs12096705	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097050	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12097057	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12728874	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12728885	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12729384	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12729517	1.00[ASN][1000 genomes]
rs12730766	1.00[ASN][1000 genomes]
rs12733694	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12737630	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12737639	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12742072	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12742786	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12747496	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12747726	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12750650	1.00[ASN][1000 genomes]
rs12750988	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12751031	1.00[ASN][1000 genomes]
rs12754775	1.00[ASN][1000 genomes]
rs13376078	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34752899	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34862308	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34870271	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35106424	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55999930	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56045708	1.00[ASN][1000 genomes]
rs56061025	1.00[ASN][1000 genomes]
rs56407851	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58098260	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60520413	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61597647	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828703	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828704	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828708	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828709	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828710	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71646810	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873351	chr1:239636613-240324200	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2757778	chr1:239766094-240389504	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv2759009	chr1:239766094-240389504	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv35011	chr1:239907420-240298959	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	esv2756891	chr1:239907420-240308147	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv873353	chr1:239913038-240253320	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv873354	chr1:239913038-240303322	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv827531	chr1:239914745-240300206	Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv873355	chr1:239934541-240206985	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv534543	chr1:239940371-240191534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv519393	chr1:239962002-240190588	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv997935	chr1:240067402-240231654	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3336326	chr1:240111594-240430845	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv3399078	chr1:240126875-240188660	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1014002	chr1:240134783-240453624	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv535362	chr1:240134783-240453624	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv1012980	chr1:240178095-240221986	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1007197	chr1:240181417-240209741	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:240185000-240185400	Active TSS	Psoas Muscle	Psoas

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