Variant report

Variant	rs7164736
Chromosome Location	chr15:50979420-50979421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr15:50978153-50979761	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr15:50979041-50979557	HepG2	liver:	n/a	chr15:50979356-50979373
3	MAX	chr15:50978075-50979750	MCF-7	breast:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
4	E2F6	chr15:50978088-50979695	K562	blood:	n/a	chr15:50978960-50978969 chr15:50979100-50979109 chr15:50979052-50979066
5	GTF2B	chr15:50978923-50979425	K562	blood:	n/a	n/a
6	POLR2A	chr15:50978379-50979713	PFSK-1	brain:	n/a	n/a
7	USF1	chr15:50978443-50979628	A549	lung:	n/a	chr15:50979044-50979055 chr15:50979045-50979054 chr15:50978995-50979006 chr15:50979044-50979057 chr15:50978822-50978838 chr15:50979046-50979055 chr15:50978960-50978976
8	RCOR1	chr15:50978234-50979543	Hela-S3	cervix:	n/a	n/a
9	MBD4	chr15:50978986-50979503	HepG2	liver:	n/a	n/a
10	PAX5	chr15:50978290-50979472	GM12892	blood:	n/a	chr15:50979100-50979109 chr15:50978956-50978965 chr15:50979332-50979359 chr15:50979058-50979067
11	IRF1	chr15:50978725-50979744	K562	blood:	n/a	n/a
12	CHD2	chr15:50978300-50979648	H1-hESC	embryonic stem cell:	n/a	chr15:50978538-50978548
13	CHD1	chr15:50978222-50979500	GM12878	blood:	n/a	chr15:50978538-50978548
14	SIN3AK20	chr15:50977466-50980443	MCF-7	breast:	n/a	n/a
15	RFX5	chr15:50978825-50979675	HepG2	liver:	n/a	n/a
16	USF1	chr15:50978533-50979566	ECC-1	luminal epithelium:	n/a	chr15:50979044-50979055 chr15:50979045-50979054 chr15:50978995-50979006 chr15:50979044-50979057 chr15:50978822-50978838 chr15:50979046-50979055 chr15:50978960-50978976
17	MAX	chr15:50978284-50979601	HCT-116	colon:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
18	BHLHE40	chr15:50978197-50979635	HepG2	liver:	n/a	chr15:50979045-50979054 chr15:50979044-50979057 chr15:50978822-50978838 chr15:50979046-50979055 chr15:50978960-50978976
19	RCOR1	chr15:50977930-50980006	K562	blood:	n/a	n/a
20	POLR2A	chr15:50978003-50979732	H1-hESC	embryonic stem cell:	n/a	n/a
21	RCOR1	chr15:50978229-50979740	GM12878	blood:	n/a	n/a
22	MAX	chr15:50978099-50979679	K562	blood:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
23	POLR2A	chr15:50978169-50979455	H1-hESC	embryonic stem cell:	n/a	n/a
24	ARID3A	chr15:50979052-50979685	HepG2	liver:	n/a	n/a
25	POLR2A	chr15:50978153-50979478	H1-neurons	neurons:	n/a	n/a
26	RELA	chr15:50977926-50979599	GM12891	blood:	n/a	n/a
27	TEAD4	chr15:50978471-50979556	ECC-1	luminal epithelium:	n/a	n/a
28	TBP	chr15:50978166-50979502	H1-hESC	embryonic stem cell:	n/a	n/a
29	SIN3A	chr15:50978011-50979654	GM12878	blood:	n/a	chr15:50979045-50979054 chr15:50978996-50979005
30	POLR2A	chr15:50978385-50979538	GM12878	blood:	n/a	n/a
31	CEBPB	chr15:50978256-50979686	Hela-S3	cervix:	n/a	chr15:50979356-50979373
32	MYC	chr15:50978315-50979536	Hela-S3	cervix:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
33	TBL1XR1	chr15:50978408-50979701	GM12878	blood:	n/a	n/a
34	HMGN3	chr15:50978202-50979420	K562	blood:	n/a	chr15:50978325-50978332
35	CEBPD	chr15:50978985-50979608	K562	blood:	n/a	n/a
36	TCF12	chr15:50978404-50979554	ECC-1	luminal epithelium:	n/a	chr15:50979073-50979081
37	SIN3AK20	chr15:50977698-50979682	MCF-7	breast:	n/a	n/a
38	SMC3	chr15:50979230-50979514	HepG2	liver:	n/a	n/a
39	TAF1	chr15:50978377-50979491	GM12878	blood:	n/a	n/a
40	CREB1	chr15:50978628-50979455	K562	blood:	n/a	n/a
41	MAX	chr15:50978069-50979672	HCT-116	colon:	n/a	chr15:50979048-50979064 chr15:50978996-50979005
42	E2F4	chr15:50978394-50979623	MCF10A-Er-Src	breast:	n/a	chr15:50978960-50978969 chr15:50979100-50979109 chr15:50979052-50979066
43	TAF1	chr15:50978259-50979505	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr15:50978245-50979575	IMR90	lung:	n/a	n/a
45	JUND	chr15:50978225-50979497	A549	lung:	n/a	n/a
46	TAF1	chr15:50978281-50979451	HepG2	liver:	n/a	n/a
47	USF2	chr15:50978243-50979662	GM12878	blood:	n/a	chr15:50979045-50979054 chr15:50979044-50979057 chr15:50979044-50979055 chr15:50978822-50978838 chr15:50979046-50979055 chr15:50978996-50979007 chr15:50978960-50978976
48	MTA3	chr15:50977773-50980208	GM12878	blood:	n/a	n/a
49	CHD2	chr15:50978184-50979560	Hela-S3	cervix:	n/a	chr15:50978538-50978548
50	GTF2F1	chr15:50978801-50979524	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:50650545..50654228-chr15:50976566..50979826,3	MCF-7	breast:
2	chr15:50977419..50980911-chr15:51055926..51058477,4	K562	blood:
3	chr15:50977442..50979922-chr15:51198976..51201748,2	MCF-7	breast:
4	chr15:50977828..50980537-chr15:51197788..51202411,5	MCF-7	breast:
5	chr15:50977199..50979864-chr15:51198670..51201821,3	K562	blood:
6	chr15:50977319..50980700-chr15:51053372..51060901,7	MCF-7	breast:
7	chr15:50978981..50979771-chr5:102897847..102898677,2	Hela-S3	cervix:
8	chr12:48213520..48214107-chr15:50978876..50979508,2	Hela-S3	cervix:
9	chr15:50976295..50981465-chr15:51052766..51059546,15	MCF-7	breast:
10	chr15:50978732..50980573-chr15:51017236..51021857,4	K562	blood:
11	chr15:50978677..50979596-chr19:59055605..59056105,2	NB4	blood:
12	chr15:50645819..50647987-chr15:50977616..50981646,3	MCF-7	breast:
13	chr11:62572414..62573039-chr15:50978738..50979496,2	HCT-116	colon:
14	chr15:50979172..50980839-chr15:51122039..51124259,2	MCF-7	breast:
15	chr15:50978805..50979560-chr9:131940463..131940977,2	Hela-S3	cervix:
16	chr15:50645260..50648664-chr15:50977679..50981268,7	MCF-7	breast:
17	chr11:65266923..65267477-chr15:50979029..50979717,2	Hela-S3	cervix:
18	chr15:50977199..50981459-chr15:51198510..51202863,6	K562	blood:
19	chr15:50977757..50980171-chr22:36876614..36879193,2	MCF-7	breast:

Variant related genes	Relation type
TRPM7	TF binding region
RN7SL354P	TF binding region
ENSG00000130726	Chromatin interaction
ENSG00000100348	Chromatin interaction
ENSG00000061273	Chromatin interaction
ENSG00000112874	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000264109	Chromatin interaction
ENSG00000162231	Chromatin interaction
ENSG00000081014	Chromatin interaction
ENSG00000259715	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000244879	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10519282	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070790	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs11632447	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634859	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635052	1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635167	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635825	1.00[ASW][hapmap];0.81[YRI][hapmap]
rs12101377	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101614	1.00[ASN][1000 genomes]
rs12102069	1.00[ASN][1000 genomes]
rs12440585	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953031	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs16963739	0.85[GIH][hapmap]
rs16963744	0.85[GIH][hapmap]
rs16963774	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs16963775	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16963776	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16963790	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16963844	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17520308	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135451	1.00[ASN][1000 genomes]
rs2163098	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414070	1.00[ASN][1000 genomes]
rs2414071	1.00[ASN][1000 genomes]
rs28369117	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405754	1.00[ASN][1000 genomes]
rs28440118	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs28568888	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28608916	1.00[ASN][1000 genomes]
rs28657876	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28696723	1.00[ASN][1000 genomes]
rs28699274	1.00[ASN][1000 genomes]
rs28712268	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28723479	1.00[ASN][1000 genomes]
rs28749239	1.00[ASN][1000 genomes]
rs3858903	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163741	1.00[ASN][1000 genomes]
rs7174266	1.00[ASN][1000 genomes]
rs72739001	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740403	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740405	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740406	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740407	1.00[ASN][1000 genomes]
rs72740412	1.00[ASN][1000 genomes]
rs72740423	1.00[ASN][1000 genomes]
rs72740428	1.00[ASN][1000 genomes]
rs72740469	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740470	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72740482	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023464	1.00[CEU][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs8031444	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040136	1.00[CHD][hapmap];0.83[GIH][hapmap]
rs8043156	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[ASN][1000 genomes]
rs9806676	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920545	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
23	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
24	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
25	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
26	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
27	nsv1051400	chr15:50890333-51046283	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50976800-50979800	Active TSS	Right Ventricle	heart
2	chr15:50977000-50979800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr15:50977000-50980200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:50977000-50980400	Active TSS	GM12878-XiMat	blood
5	chr15:50977200-50979800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:50977200-50979800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:50977200-50980000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:50977400-50979600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:50977400-50979600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr15:50977400-50979600	Active TSS	Fetal Heart	heart
11	chr15:50977400-50979600	Active TSS	Left Ventricle	heart
12	chr15:50977400-50979800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:50977400-50980400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:50977600-50979600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:50977600-50979600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:50977600-50979600	Active TSS	Brain Angular Gyrus	brain
17	chr15:50977600-50979600	Active TSS	Fetal Intestine Large	intestine
18	chr15:50977600-50979800	Active TSS	H9 Cell Line	embryonic stem cell
19	chr15:50977600-50979800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:50977600-50980000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:50977600-50980000	Active TSS	HSMMtube	muscle
22	chr15:50977800-50979600	Active TSS	Brain Cingulate Gyrus	brain
23	chr15:50977800-50979800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr15:50977800-50979800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:50977800-50979800	Active TSS	Aorta	Aorta
26	chr15:50977800-50979800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:50977800-50979800	Active TSS	Fetal Muscle Trunk	muscle
28	chr15:50977800-50979800	Active TSS	Ovary	ovary
29	chr15:50977800-50979800	Active TSS	Psoas Muscle	Psoas
30	chr15:50977800-50980200	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr15:50977800-50980200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:50978000-50979600	Active TSS	Esophagus	oesophagus
33	chr15:50978000-50979600	Active TSS	Lung	lung
34	chr15:50978000-50979600	Active TSS	Pancreas	Pancrea
35	chr15:50978000-50979600	Active TSS	Placenta Amnion	Placenta Amnion
36	chr15:50978000-50979600	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr15:50978000-50979600	Active TSS	A549	lung
38	chr15:50978000-50979800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:50978200-50979600	Active TSS	Brain Anterior Caudate	brain
40	chr15:50978200-50979600	Active TSS	Brain Hippocampus Middle	brain
41	chr15:50978200-50979600	Active TSS	Colon Smooth Muscle	Colon
42	chr15:50978200-50979600	Active TSS	Fetal Brain Female	brain
43	chr15:50978200-50979600	Active TSS	Fetal Stomach	stomach
44	chr15:50978200-50979600	Active TSS	Fetal Thymus	thymus
45	chr15:50978200-50979800	Active TSS	Thymus	Thymus
46	chr15:50978400-50979600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr15:50978400-50979600	Active TSS	Fetal Muscle Leg	muscle
48	chr15:50978400-50979600	Active TSS	Spleen	Spleen
49	chr15:50978400-50979800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:50978400-50979800	Active TSS	Stomach Smooth Muscle	stomach

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