Variant report

Variant	rs7164820
Chromosome Location	chr15:40130575-40130576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10152851	0.82[AFR][1000 genomes]
rs10520139	1.00[AMR][1000 genomes]
rs16969529	1.00[AMR][1000 genomes]
rs57526859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57832843	1.00[AMR][1000 genomes]
rs7162889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393230	1.00[AMR][1000 genomes]
rs73393232	1.00[AMR][1000 genomes]
rs73393237	1.00[AMR][1000 genomes]
rs73393242	1.00[AMR][1000 genomes]
rs73393273	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40121600-40137200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40123400-40143200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:40123600-40162400	Weak transcription	Aorta	Aorta
4	chr15:40123800-40143600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:40124200-40138200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:40124400-40137000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:40126200-40133800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:40126400-40133000	Weak transcription	HSMM	muscle
9	chr15:40126400-40134600	Weak transcription	HMEC	breast
10	chr15:40126400-40142600	Weak transcription	NHLF	lung
11	chr15:40126600-40138000	Weak transcription	Osteobl	bone
12	chr15:40126800-40134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:40127000-40138200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:40127200-40142600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:40128600-40134800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:40128800-40133600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:40128800-40134800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:40128800-40136000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:40129200-40136000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:40129800-40138200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:40130200-40133200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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