Variant report

Variant	rs71651410
Chromosome Location	chr1:69730541-69730542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34461570	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34970335	1.00[AFR][1000 genomes]
rs71651408	1.00[AMR][1000 genomes]
rs7546233	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7556196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1299	chr1:69687227-69732225	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1014209	chr1:69710467-69910241	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69728200-69731200	Enhancers	Brain Germinal Matrix	brain
2	chr1:69729200-69731200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:69729400-69730600	Enhancers	Fetal Lung	lung
4	chr1:69729400-69730800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:69729400-69730800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:69729800-69730600	Enhancers	Adipose Nuclei	Adipose
7	chr1:69729800-69730600	Enhancers	Stomach Smooth Muscle	stomach
8	chr1:69729800-69730800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:69729800-69731200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:69730000-69730800	Enhancers	Fetal Brain Female	brain
11	chr1:69730000-69733400	Weak transcription	Fetal Brain Male	brain
12	chr1:69730000-69735600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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