Variant report

Variant	rs7165404
Chromosome Location	chr15:45723501-45723502
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1295502	0.90[AMR][1000 genomes]
rs2433620	0.90[AMR][1000 genomes]
rs2433621	0.90[AMR][1000 genomes]
rs2453522	0.90[AMR][1000 genomes]
rs2467866	0.90[AMR][1000 genomes]
rs2467867	0.90[AMR][1000 genomes]
rs2486282	0.90[AMR][1000 genomes]
rs7168380	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45722600-45724000	Active TSS	Esophagus	oesophagus
2	chr15:45722600-45724000	Active TSS	Fetal Intestine Large	intestine
3	chr15:45722600-45724000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:45722600-45724200	Active TSS	Duodenum Mucosa	Duodenum
5	chr15:45722600-45724600	Active TSS	Small Intestine	intestine
6	chr15:45722600-45724800	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr15:45722600-45724800	Active TSS	Sigmoid Colon	Sigmoid Colon
8	chr15:45722600-45725400	Active TSS	Colonic Mucosa	Colon
9	chr15:45722600-45725400	Active TSS	Rectal Smooth Muscle	rectum
10	chr15:45722600-45727200	Weak transcription	Hela-S3	cervix
11	chr15:45723000-45723800	Weak transcription	Gastric	stomach
12	chr15:45723000-45724000	Enhancers	Pancreas	Pancrea
13	chr15:45723000-45724000	Active TSS	Stomach Mucosa	stomach
14	chr15:45723000-45724000	Bivalent Enhancer	HepG2	liver
15	chr15:45723000-45724200	Enhancers	Liver	Liver
16	chr15:45723000-45724400	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr15:45723000-45724600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:45723000-45726000	Weak transcription	Ovary	ovary
19	chr15:45723200-45723800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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