Variant report

Variant	rs7165662
Chromosome Location	chr15:59223206-59223207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59220368..59223224-chr15:59377778..59380612,2	K562	blood:
2	chr15:59062543..59065040-chr15:59222261..59224387,2	K562	blood:

Variant related genes	Relation type
ENSG00000128923	Chromatin interaction
ENSG00000157450	Chromatin interaction
ENSG00000245975	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57194530	0.83[AFR][1000 genomes]
rs61182902	0.81[AFR][1000 genomes]
rs6494044	1.00[AFR][1000 genomes]
rs6494046	1.00[AFR][1000 genomes]
rs7181271	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59170800-59224200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:59179800-59224200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:59182200-59224200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:59192200-59223400	Weak transcription	Right Ventricle	heart
5	chr15:59192600-59223400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:59192800-59224200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:59193000-59224200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:59193000-59224200	Weak transcription	Colonic Mucosa	Colon
9	chr15:59193000-59224400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:59194000-59223600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:59197200-59225000	Weak transcription	Gastric	stomach
12	chr15:59199800-59224200	Weak transcription	Esophagus	oesophagus
13	chr15:59200600-59224200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:59209600-59223400	Weak transcription	Fetal Brain Male	brain
15	chr15:59209600-59223400	Weak transcription	Fetal Brain Female	brain
16	chr15:59211800-59224200	Weak transcription	Pancreas	Pancrea
17	chr15:59212200-59223400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:59215600-59224200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:59215800-59223400	Weak transcription	Thymus	Thymus
20	chr15:59217800-59223400	Weak transcription	Psoas Muscle	Psoas
21	chr15:59217800-59223400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:59219400-59223400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:59219800-59225000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:59219800-59225000	Weak transcription	Spleen	Spleen
25	chr15:59220000-59224400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:59220800-59223600	Weak transcription	Brain Germinal Matrix	brain
27	chr15:59221400-59223400	Weak transcription	Fetal Kidney	kidney
28	chr15:59221600-59223400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:59221600-59223400	Weak transcription	Osteobl	bone
30	chr15:59221600-59224000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:59221600-59224200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:59221600-59224200	Weak transcription	Placenta	Placenta
33	chr15:59222000-59223400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr15:59222000-59223400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:59222000-59223600	Weak transcription	HSMM	muscle
36	chr15:59222000-59224000	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:59222000-59224200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:59222200-59223400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:59222200-59223600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:59222200-59224000	Enhancers	Colon Smooth Muscle	Colon
41	chr15:59222400-59223400	Weak transcription	Fetal Intestine Large	intestine
42	chr15:59222400-59223400	Active TSS	GM12878-XiMat	blood
43	chr15:59222400-59223600	Weak transcription	NH-A	brain
44	chr15:59222400-59224000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr15:59222600-59223400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:59222600-59223400	Enhancers	Adipose Nuclei	Adipose
47	chr15:59222600-59223600	Genic enhancers	Fetal Thymus	thymus
48	chr15:59222600-59224200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:59222600-59224200	Weak transcription	Ovary	ovary
50	chr15:59222800-59223400	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links