Variant report

Variant	rs7165737
Chromosome Location	chr15:32977101-32977102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11638903	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12441136	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12442397	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs16966853	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[ASN][1000 genomes]
rs35703183	0.89[ASN][1000 genomes]
rs3817592	0.82[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6494576	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7170561	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7177176	0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv469587	chr15:32821940-32986579	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv482780	chr15:32821940-32986579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv568915	chr15:32965357-32994056	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7165737	ARHGAP11A	cis	parietal	SCAN
rs7165737	SLC12A6	cis	cerebellum	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32961200-32980200	Weak transcription	Thymus	Thymus
2	chr15:32964600-32990800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:32964800-32993800	Weak transcription	Fetal Brain Male	brain
4	chr15:32965000-32983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:32970000-32977800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:32970000-32982600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:32970200-32977800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:32970200-32979400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:32970200-32979600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:32972000-32979400	Weak transcription	HepG2	liver
11	chr15:32973200-32986000	Weak transcription	Brain Germinal Matrix	brain
12	chr15:32974000-32977200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:32974000-32978400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:32974000-32981000	Enhancers	HMEC	breast
15	chr15:32974200-32977200	Enhancers	A549	lung
16	chr15:32974200-32977200	Enhancers	NHLF	lung
17	chr15:32974200-32978000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:32974600-32977600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:32974800-32978400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:32974800-32978600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:32975000-32977600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:32975000-32978600	Strong transcription	Liver	Liver
23	chr15:32975000-32983200	Weak transcription	Brain Substantia Nigra	brain
24	chr15:32975000-32983400	Weak transcription	Brain Angular Gyrus	brain
25	chr15:32975200-32977600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:32975200-32977800	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:32975200-32980200	Weak transcription	Placenta	Placenta
28	chr15:32975200-32983400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:32975200-32983800	Weak transcription	Brain Anterior Caudate	brain
30	chr15:32975200-32986000	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:32975400-32978200	Enhancers	NH-A	brain
32	chr15:32976000-32977200	Flanking Active TSS	Osteobl	bone
33	chr15:32976200-32978400	Flanking Active TSS	NHEK	skin
34	chr15:32976400-32977200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr15:32976400-32980800	Enhancers	NHDF-Ad	bronchial
36	chr15:32976600-32977800	Weak transcription	Adipose Nuclei	Adipose
37	chr15:32976600-32977800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:32976600-32978000	Weak transcription	HUVEC	blood vessel
39	chr15:32976600-32978200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:32976600-32978200	Active TSS	HSMMtube	muscle
41	chr15:32976600-32979400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:32976600-32980200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:32976600-32980200	Weak transcription	Fetal Brain Female	brain
44	chr15:32976800-32977800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:32976800-32978000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:32976800-32978000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr15:32977000-32977400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:32977000-32977400	Enhancers	HSMM	muscle
49	chr15:32977000-32980400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:32977000-32983800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links