Variant report

Variant	rs71662159
Chromosome Location	chr1:86859075-86859076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:86858845..86860398-chr1:86869035..86871244,2	K562	blood:
2	chr1:86847598..86849300-chr1:86857540..86859309,2	MCF-7	breast:
3	chr1:86854491..86856100-chr1:86858979..86861323,2	K562	blood:
4	chr1:86856582..86859443-chr1:86866472..86868164,2	K562	blood:

Variant related genes	Relation type
ENSG00000122417	Chromatin interaction
ENSG00000231349	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6657426	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871081	chr1:86806372-86892819	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86815200-86860200	Weak transcription	Fetal Brain Male	brain
2	chr1:86820400-86860200	Weak transcription	NHEK	skin
3	chr1:86836600-86860800	Weak transcription	Aorta	Aorta
4	chr1:86840600-86859600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:86841000-86859800	Weak transcription	HSMM	muscle
6	chr1:86841600-86859800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:86843400-86860800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:86843600-86859200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:86843600-86860600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:86843600-86860800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:86844800-86859200	Weak transcription	Brain Germinal Matrix	brain
12	chr1:86844800-86861000	Weak transcription	Fetal Intestine Small	intestine
13	chr1:86845000-86859200	Weak transcription	NH-A	brain
14	chr1:86845000-86859400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:86845000-86860200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:86845000-86860600	Weak transcription	Fetal Thymus	thymus
17	chr1:86845000-86860800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:86845200-86859400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:86846600-86860400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:86848800-86861000	Weak transcription	Primary B cells from cord blood	blood
21	chr1:86849200-86860200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:86849200-86860800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:86851800-86859800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:86852400-86860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:86855200-86859200	Weak transcription	Osteobl	bone
26	chr1:86855600-86859600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:86855600-86860200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:86855600-86860800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:86855600-86860800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:86855800-86859600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:86855800-86860800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr1:86855800-86861000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr1:86856200-86860600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr1:86856600-86859600	Weak transcription	Thymus	Thymus
35	chr1:86857200-86861000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:86857400-86859200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:86857800-86860200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:86858200-86859600	Enhancers	Dnd41	blood
39	chr1:86858400-86860800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr1:86858600-86859200	Enhancers	Fetal Lung	lung
41	chr1:86858600-86859600	Enhancers	Brain Hippocampus Middle	brain
42	chr1:86858600-86859600	Enhancers	NHDF-Ad	bronchial
43	chr1:86858600-86859800	Enhancers	Fetal Heart	heart
44	chr1:86858600-86860800	Enhancers	Primary T cells from cord blood	blood
45	chr1:86858600-86860800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr1:86858600-86860800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr1:86858800-86859200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:86858800-86859200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:86858800-86859200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr1:86858800-86859400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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