The 2.0 version of rSNPBase

Variant report

Variant rs71662229
Chromosome Location chr4:54329805-54329806
allele -/GAA
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54270000-54330800 Weak transcription Brain Substantia Nigra brain
2 chr4:54292200-54331200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr4:54295200-54331600 Weak transcription Hela-S3 cervix
4 chr4:54295600-54339400 Weak transcription Fetal Brain Male brain
5 chr4:54316800-54332600 Weak transcription Esophagus oesophagus
6 chr4:54317200-54331400 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr4:54317400-54332600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr4:54318200-54330200 Strong transcription Placenta Placenta
9 chr4:54318600-54330000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr4:54318600-54330000 Strong transcription Fetal Thymus thymus
11 chr4:54318600-54330400 Strong transcription Primary hematopoietic stem cells blood
12 chr4:54318800-54330200 Strong transcription HUES64 Cell Line embryonic stem cell
13 chr4:54319000-54330200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr4:54320000-54332600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr4:54320000-54332600 Weak transcription Aorta Aorta
16 chr4:54320000-54332800 Weak transcription Fetal Stomach stomach
17 chr4:54320000-54342000 Weak transcription Pancreas Pancrea
18 chr4:54320000-54353200 Weak transcription Gastric stomach
19 chr4:54321000-54332600 Weak transcription H9 Cell Line embryonic stem cell
20 chr4:54321200-54331800 Weak transcription Ovary ovary
21 chr4:54321400-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr4:54321800-54330800 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr4:54321800-54339800 Weak transcription Placenta Amnion Placenta Amnion
24 chr4:54322000-54331200 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr4:54322200-54330600 Weak transcription Thymus Thymus
26 chr4:54322200-54331400 Weak transcription Brain Anterior Caudate brain
27 chr4:54322200-54331600 Weak transcription HSMMtube muscle
28 chr4:54322800-54331200 Weak transcription Psoas Muscle Psoas
29 chr4:54324600-54330400 Strong transcription Liver Liver
30 chr4:54325800-54330000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr4:54326200-54330600 Weak transcription Stomach Smooth Muscle stomach
32 chr4:54326400-54330400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr4:54326400-54330400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr4:54326400-54331200 Weak transcription GM12878-XiMat blood
35 chr4:54326400-54332200 Weak transcription Fetal Intestine Small intestine
36 chr4:54326400-54332600 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr4:54327400-54330000 Weak transcription Primary T killer naive cells fromperipheralblood blood
38 chr4:54327600-54347800 Weak transcription Fetal Muscle Trunk muscle
39 chr4:54327800-54330400 Weak transcription K562 blood
40 chr4:54327800-54331000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr4:54327800-54334600 Weak transcription NHLF lung
42 chr4:54327800-54335200 Weak transcription HMEC breast
43 chr4:54327800-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr4:54327800-54362200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr4:54328000-54330600 Weak transcription Brain Hippocampus Middle brain
46 chr4:54328000-54330800 Weak transcription NHEK skin
47 chr4:54328000-54331200 Weak transcription Muscle Satellite Cultured Cells --
48 chr4:54328000-54332000 Weak transcription HUVEC blood vessel
49 chr4:54328000-54332400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr4:54328000-54332600 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015