Variant report

Variant	rs7166705
Chromosome Location	chr15:43265126-43265127
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10518779	0.84[EUR][1000 genomes]
rs12898255	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16957168	0.88[ASW][hapmap]
rs16957422	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.81[AFR][1000 genomes]
rs2176870	0.93[CHD][hapmap]
rs2412748	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28374998	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28494835	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28581361	0.81[AFR][1000 genomes]
rs28609797	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28613047	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28633493	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28796057	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28810091	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28871732	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35838915	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3759792	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4274403	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4924705	0.94[ASW][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];0.88[LWK][hapmap]
rs66947001	0.81[EUR][1000 genomes]
rs7170376	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7176957	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7178248	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7181859	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7182650	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8028785	0.82[ASW][hapmap];0.82[EUR][1000 genomes]
rs8036674	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8041432	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9920061	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9920182	0.94[ASW][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9920202	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3421859	chr15:43249285-43280570	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:43236000-43268400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:43241200-43269800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:43241600-43271000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:43241600-43271800	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:43241800-43270800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:43242200-43270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:43244000-43276400	Weak transcription	Psoas Muscle	Psoas
9	chr15:43244600-43266200	Weak transcription	Gastric	stomach
10	chr15:43248000-43320600	Weak transcription	Stomach Mucosa	stomach
11	chr15:43249400-43268800	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:43249600-43283200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:43251400-43269800	Strong transcription	Fetal Thymus	thymus
14	chr15:43252400-43298400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:43252800-43295800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:43253600-43265400	Weak transcription	Pancreas	Pancrea
17	chr15:43254800-43266800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:43255200-43265200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:43255200-43278800	Weak transcription	Esophagus	oesophagus
20	chr15:43257200-43265400	Weak transcription	Aorta	Aorta
21	chr15:43257400-43268800	Weak transcription	Small Intestine	intestine
22	chr15:43258600-43265200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:43258600-43265400	Weak transcription	NH-A	brain
24	chr15:43258600-43266800	Weak transcription	HMEC	breast
25	chr15:43258600-43268000	Weak transcription	NHEK	skin
26	chr15:43258800-43265200	Weak transcription	Right Ventricle	heart
27	chr15:43258800-43277600	Weak transcription	Colonic Mucosa	Colon
28	chr15:43260200-43270600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:43260200-43270800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:43260600-43270400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:43260600-43270400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:43260600-43270800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:43260600-43271000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr15:43260600-43271800	Strong transcription	Adipose Nuclei	Adipose
35	chr15:43261000-43277000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:43261800-43270800	Strong transcription	Primary T cells from cord blood	blood
37	chr15:43262400-43269600	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr15:43262400-43269800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:43262400-43276800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:43262600-43265800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:43262600-43265800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:43262600-43266000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:43262600-43267000	Strong transcription	Fetal Kidney	kidney
44	chr15:43262600-43267400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:43262600-43269400	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr15:43262600-43269600	Strong transcription	Fetal Intestine Large	intestine
47	chr15:43262600-43269800	Strong transcription	Placenta	Placenta
48	chr15:43262600-43269800	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:43262600-43270400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:43262600-43270600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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