Variant report

Variant	rs7166861
Chromosome Location	chr15:92396611-92396612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:92396500-92396650	Caco-2	colon:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
2	POLR2A	chr15:92396214-92397322	H1-neurons	neurons:	n/a	n/a
3	MAX	chr15:92395781-92397743	A549	lung:	n/a	chr15:92397690-92397706 chr15:92397580-92397590
4	CTCF	chr15:92396480-92396630	GM12874	blood:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
5	CTCFL	chr15:92396338-92396612	K562	blood:	n/a	n/a
6	EP300	chr15:92396191-92397476	SK-N-SH	brain:	n/a	chr15:92397056-92397072 chr15:92396434-92396450 chr15:92397400-92397416 chr15:92396547-92396563 chr15:92397464-92397473 chr15:92396711-92396727 chr15:92397059-92397075 chr15:92397007-92397016
7	CTCF	chr15:92396448-92396618	HepG2	liver:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
8	SIN3A	chr15:92395781-92396778	H1-hESC	embryonic stem cell:	n/a	chr15:92396217-92396230 chr15:92396104-92396113 chr15:92396013-92396024
9	CTCF	chr15:92396500-92396650	HRE	kidney:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
10	CTCF	chr15:92395406-92397813	SK-N-SH	brain:	n/a	chr15:92396518-92396534 chr15:92396517-92396535 chr15:92395772-92395785 chr15:92396239-92396252
11	CREB1	chr15:92396335-92397212	A549	lung:	n/a	n/a
12	POLR2A	chr15:92395220-92397694	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr15:92396397-92396673	GM19238	blood:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
14	POLR2A	chr15:92395572-92396688	IMR90	lung:	n/a	n/a
15	CTCF	chr15:92395825-92396778	GM12878	blood:	n/a	chr15:92396518-92396534 chr15:92396517-92396535 chr15:92396239-92396252
16	MYC	chr15:92396148-92396691	MCF10A-Er-Src	breast:	n/a	n/a
17	EP300	chr15:92396470-92396647	K562	blood:	n/a	chr15:92396547-92396563
18	TAF1	chr15:92396192-92396697	Hela-S3	cervix:	n/a	n/a
19	ZNF143	chr15:92395821-92396699	Hela-S3	cervix:	n/a	chr15:92396533-92396543
20	CTCF	chr15:92396480-92396630	AoAF	blood vessel:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
21	MYC	chr15:92395800-92396661	K562	blood:	n/a	n/a
22	CTCF	chr15:92396480-92396630	HMF	breast:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
23	CTCF	chr15:92396480-92396630	GM12869	blood:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
24	CTCF	chr15:92396340-92396678	SK-N-SH_RA	brain:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
25	CTCF	chr15:92396500-92396650	WERI-Rb-1	eye:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
26	CTCF	chr15:92395958-92396677	Gliobla	brain:	n/a	chr15:92396518-92396534 chr15:92396517-92396535 chr15:92396239-92396252
27	CTCF	chr15:92396418-92396674	H1-hESC	embryonic stem cell:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
28	CTCF	chr15:92396480-92396630	HEEpiC	esophagus:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
29	UBTF	chr15:92395858-92397105	K562	blood:	n/a	n/a
30	CTBP2	chr15:92395807-92396639	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr15:92395957-92399695	Raji	blood:	n/a	n/a
32	POLR2A	chr15:92395889-92397569	A549	lung:	n/a	n/a
33	RAD21	chr15:92395762-92396678	A549	lung:	n/a	chr15:92396515-92396534 chr15:92395983-92395993 chr15:92396524-92396533 chr15:92396009-92396023
34	MAZ	chr15:92395442-92397945	IMR90	lung:	n/a	chr15:92397690-92397706 chr15:92397580-92397590
35	E2F6	chr15:92395849-92396761	A549	lung:	n/a	chr15:92396338-92396349 chr15:92396542-92396554 chr15:92396333-92396347 chr15:92396339-92396349
36	PAX5	chr15:92396349-92396672	GM12892	blood:	n/a	chr15:92396442-92396451
37	POLR2A	chr15:92396271-92396855	A549	lung:	n/a	n/a
38	CTCF	chr15:92396368-92396624	SK-N-SH_RA	brain:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
39	CTCF	chr15:92396500-92396650	HUVEC	blood vessel:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
40	PBX3	chr15:92396054-92396704	A549	lung:	n/a	n/a
41	MYC	chr15:92396519-92397167	MCF-7	breast:	n/a	n/a
42	ZNF143	chr15:92395894-92396695	K562	blood:	n/a	chr15:92396533-92396543
43	POLR2A	chr15:92396114-92397022	H1-hESC	embryonic stem cell:	n/a	n/a
44	RAD21	chr15:92395858-92396625	SK-N-SH_RA	brain:	n/a	chr15:92396515-92396534 chr15:92395983-92395993 chr15:92396524-92396533 chr15:92396009-92396023
45	YY1	chr15:92396383-92396852	H1-hESC	embryonic stem cell:	n/a	chr15:92396536-92396550 chr15:92396535-92396544 chr15:92396530-92396544
46	RAD21	chr15:92395731-92396719	HCT-116	colon:	n/a	chr15:92396515-92396534 chr15:92395983-92395993 chr15:92396524-92396533 chr15:92396009-92396023
47	CTCF	chr15:92396444-92396614	HUVEC	blood vessel:	n/a	chr15:92396518-92396534 chr15:92396517-92396535
48	CTCF	chr15:92395937-92396689	HCT-116	colon:	n/a	chr15:92396518-92396534 chr15:92396517-92396535 chr15:92396239-92396252
49	TCF12	chr15:92395641-92396793	A549	lung:	n/a	chr15:92396220-92396230
50	NANOG	chr15:92396317-92396656	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:92396574-92396624	HRE	kidney:	n/a
2	chr15:92396574-92396624	AG09309	skin:	n/a
3	chr15:92396574-92396624	BE2_C	brain:	n/a
4	chr15:92396574-92396624	IMR90	lung:	fetal
5	chr15:92396574-92396624	Jurkat	blood:	n/a
6	chr15:92396574-92396624	HIPEpiC	eye:	n/a
7	chr15:92396574-92396624	AG09319	gingival:	n/a
8	chr15:92396574-92396624	SK-N-SH_RA	brain:	n/a
9	chr15:92396574-92396624	Caco-2	colon:	n/a
10	chr15:92396574-92396624	H1-hESC	embryonic stem cell:	embryo
11	chr15:92396574-92396624	NHBE	bronchial:	n/a
12	chr15:92396574-92396624	HRPEpiC	eye:	n/a
13	chr15:92396574-92396624	HNPCEpiC	eye:	n/a
14	chr15:92396574-92396624	HAEpiC	amniotic membrane:	n/a
15	chr15:92396574-92396624	AG04449	skin:	fetal
16	chr15:92396574-92396624	HCM	heart:	n/a
17	chr15:92396574-92396624	K562	blood:	n/a
18	chr15:92396574-92396624	HCPEpiC	choroid plexus:	n/a
19	chr15:92396574-92396624	NH-A	brain:	n/a
20	chr15:92396574-92396624	A549	lung:	n/a
21	chr15:92396574-92396624	HMEC	breast:	n/a
22	chr15:92396574-92396624	Hela-S3	cervix:	n/a
23	chr15:92396574-92396624	HepG2	liver:	n/a
24	chr15:92396574-92396624	HUVEC	blood vessel:	n/a
25	chr15:92396574-92396624	NHDF-neo	bronchial:	n/a
26	chr15:92396574-92396624	CMK	blood:	n/a
27	chr15:92396574-92396624	ovcar-3	ovarian:	n/a
28	chr15:92396574-92396624	NB4	blood:	n/a
29	chr15:92396574-92396624	HEK293	kidney:	embryo
30	chr15:92396574-92396624	HEEpiC	esophagus:	n/a
31	chr15:92396574-92396624	GM06990	blood:	n/a
32	chr15:92396574-92396624	GM12892	blood:	n/a
33	chr15:92396574-92396624	GM19239	blood:	n/a
34	chr15:92396574-92396624	NT2-D1	testis:	n/a
35	chr15:92396574-92396624	GM12878	blood:	n/a
36	chr15:92396574-92396624	GM12891	blood:	n/a
37	chr15:92396574-92396624	PrEC	prostate:	n/a
38	chr15:92396574-92396624	AG10803	skin:	n/a
39	chr15:92396574-92396624	HCT-116	colon:	n/a
40	chr15:92396574-92396624	HL-60	blood:	n/a
41	chr15:92396574-92396624	LNCaP	prostate:	n/a
42	chr15:92396574-92396624	T-47D	breast:	n/a
43	chr15:92396574-92396624	MCF10A-Er-Src	breast:	n/a
44	chr15:92396574-92396624	SK-N-MC	brain:	n/a
45	chr15:92396574-92396624	RPTEC	kidney:	n/a
46	chr15:92396574-92396624	U87	brain:	n/a
47	chr15:92396574-92396624	SKMC	muscle:	n/a
48	chr15:92396574-92396624	PFSK-1	brain:	n/a
49	chr15:92396574-92396624	BJ	skin:	n/a
50	chr15:92396574-92396624	ProgFib	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:92396062..92396645-chr15:92497373..92497996,2	MCF-7	breast:
2	chr15:92395627..92396664-chr15:92620274..92621236,6	MCF-7	breast:
3	chr15:92223200..92223831-chr15:92396151..92396845,2	MCF-7	breast:
4	chr15:92065622..92066569-chr15:92395720..92396658,6	MCF-7	breast:

Variant related genes	Relation type
SLCO3A1	TF binding region
SLCO3A1	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3324058	chr15:92395773-92398821	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3363259	chr15:92395873-92398346	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92395200-92397600	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:92395600-92396800	Flanking Active TSS	Liver	Liver
3	chr15:92395600-92397600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:92395600-92398000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:92395600-92398000	Active TSS	HSMMtube	muscle
6	chr15:92395600-92398400	Active TSS	Left Ventricle	heart
7	chr15:92395600-92398400	Active TSS	NHLF	lung
8	chr15:92395600-92398600	Active TSS	Aorta	Aorta
9	chr15:92395800-92396800	Flanking Bivalent TSS/Enh	Thymus	Thymus
10	chr15:92395800-92396800	Active TSS	K562	blood
11	chr15:92395800-92397000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:92395800-92397200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr15:92395800-92397400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:92395800-92397600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr15:92395800-92397600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:92395800-92397600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:92395800-92397600	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr15:92395800-92397800	Active TSS	Psoas Muscle	Psoas
19	chr15:92395800-92398000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:92395800-92398000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr15:92395800-92398000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:92395800-92398800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr15:92396000-92397200	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr15:92396000-92397200	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr15:92396000-92397400	Active TSS	H1 Cell Line	embryonic stem cell
26	chr15:92396000-92397400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:92396000-92397400	Bivalent/Poised TSS	HepG2	liver
28	chr15:92396000-92397600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:92396000-92397600	Active TSS	Primary monocytes fromperipheralblood	blood
30	chr15:92396000-92397600	Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr15:92396000-92397600	Active TSS	Osteobl	bone
32	chr15:92396000-92397800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:92396000-92397800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:92396000-92397800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:92396000-92397800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:92396000-92397800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:92396000-92397800	Active TSS	Muscle Satellite Cultured Cells	--
38	chr15:92396000-92397800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:92396000-92397800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:92396000-92397800	Active TSS	Colon Smooth Muscle	Colon
41	chr15:92396000-92397800	Active TSS	Hela-S3	cervix
42	chr15:92396000-92397800	Active TSS	Monocytes-CD14+_RO01746	blood
43	chr15:92396000-92397800	Active TSS	NHEK	skin
44	chr15:92396000-92398000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:92396000-92398000	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr15:92396000-92398000	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr15:92396000-92398000	Active TSS	A549	lung
48	chr15:92396000-92398000	Active TSS	HSMM	muscle
49	chr15:92396000-92398200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:92396000-92398200	Active TSS	Esophagus	oesophagus

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