Variant report

Variant	rs7167209
Chromosome Location	chr15:57858074-57858075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57850033..57853675-chr15:57854841..57859589,5	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2934448	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57844600-57859000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:57846800-57861400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:57847600-57859200	Weak transcription	Right Ventricle	heart
4	chr15:57847800-57859000	Weak transcription	Gastric	stomach
5	chr15:57847800-57859200	Weak transcription	Ovary	ovary
6	chr15:57847800-57859200	Weak transcription	Right Atrium	heart
7	chr15:57853600-57859400	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:57853800-57859200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:57854600-57858800	Weak transcription	Fetal Lung	lung
10	chr15:57854800-57859000	Weak transcription	Pancreas	Pancrea
11	chr15:57854800-57859000	Weak transcription	HUVEC	blood vessel
12	chr15:57854800-57862800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:57854800-57869800	Weak transcription	Lung	lung
14	chr15:57855800-57862800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:57857200-57858400	Enhancers	Primary hematopoietic stem cells	blood
16	chr15:57857400-57858200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:57857400-57858200	Enhancers	Primary B cells from cord blood	blood
18	chr15:57857400-57858200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr15:57857400-57858200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:57857400-57858200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr15:57857400-57858200	Enhancers	Colonic Mucosa	Colon
22	chr15:57857400-57858200	Enhancers	Fetal Heart	heart
23	chr15:57857400-57858200	Enhancers	Thymus	Thymus
24	chr15:57857400-57858200	Enhancers	HMEC	breast
25	chr15:57857400-57858400	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:57857400-57858400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:57857400-57858400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:57857400-57858400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr15:57857400-57858400	Enhancers	Fetal Intestine Small	intestine
30	chr15:57857400-57858400	Enhancers	Stomach Mucosa	stomach
31	chr15:57857400-57859400	Enhancers	NHEK	skin
32	chr15:57857400-57859800	Enhancers	Fetal Intestine Large	intestine
33	chr15:57857400-57860400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr15:57857400-57863400	Enhancers	Hela-S3	cervix
35	chr15:57857600-57858200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:57857600-57858200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:57857600-57858200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr15:57857600-57858200	Enhancers	Fetal Thymus	thymus
39	chr15:57857600-57858400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:57857800-57858200	Enhancers	Adipose Nuclei	Adipose
41	chr15:57857800-57858400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
42	chr15:57857800-57858400	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr15:57857800-57858800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:57857800-57858800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr15:57857800-57860400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr15:57857800-57862400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:57857800-57863200	Weak transcription	HSMM	muscle
48	chr15:57858000-57858200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:57858000-57858400	Enhancers	Primary T cells from cord blood	blood
50	chr15:57858000-57858400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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