Variant report

Variant	rs7167625
Chromosome Location	chr15:49763583-49763584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49753086..49754670-chr15:49761846..49764653,2	MCF-7	breast:
2	chr15:49740094..49742331-chr15:49762242..49764123,2	MCF-7	breast:
3	chr15:49763327..49764266-chr15:50295694..50296534,2	K562	blood:
4	chr15:49763251..49764501-chr15:50295657..50296544,5	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10048065	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11070707	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12901416	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12902107	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12902794	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1395900	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1546424	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1546425	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17480434	0.81[EUR][1000 genomes]
rs1814711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2413947	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2413958	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28393768	0.82[EUR][1000 genomes]
rs28408092	0.81[EUR][1000 genomes]
rs28430272	0.82[EUR][1000 genomes]
rs28484276	0.81[EUR][1000 genomes]
rs28669217	0.81[EUR][1000 genomes]
rs7178101	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8034473	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8038373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8040716	0.81[EUR][1000 genomes]
rs967892	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs967893	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv974574	chr15:49752716-49764974	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1043119	chr15:49760222-49844366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49752400-49764000	Weak transcription	HSMM	muscle
2	chr15:49755000-49764000	Weak transcription	Fetal Lung	lung
3	chr15:49755400-49764200	Weak transcription	Fetal Heart	heart
4	chr15:49759600-49763800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:49761000-49764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:49761000-49766000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:49761200-49763800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:49761200-49763800	Weak transcription	NHLF	lung
9	chr15:49761200-49764200	Weak transcription	Hela-S3	cervix
10	chr15:49761200-49767600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:49761800-49764800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:49762200-49763800	Enhancers	NHDF-Ad	bronchial
13	chr15:49762800-49763800	Enhancers	GM12878-XiMat	blood
14	chr15:49762800-49764000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:49762800-49764600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:49763000-49764800	Genic enhancers	Osteobl	bone
17	chr15:49763200-49763800	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:49763400-49764000	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links