Variant report

Variant	rs7167708
Chromosome Location	chr15:59889358-59889359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12900596	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12900870	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12902335	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12912229	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12916897	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28824027	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28870714	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7168003	0.95[ASN][1000 genomes]
rs8028762	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8029165	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8029294	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8029697	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029967	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8030270	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8035572	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv569606	chr15:59883809-59894636	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv19505	chr15:59888194-59904649	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59882400-59891600	Weak transcription	Small Intestine	intestine
2	chr15:59886000-59889400	Enhancers	Fetal Intestine Small	intestine
3	chr15:59886600-59889400	Enhancers	Stomach Mucosa	stomach
4	chr15:59886800-59892800	Enhancers	Fetal Intestine Large	intestine
5	chr15:59887400-59889400	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr15:59887800-59889800	Enhancers	Colonic Mucosa	Colon
7	chr15:59888600-59889400	Enhancers	Duodenum Mucosa	Duodenum
8	chr15:59888600-59891800	Weak transcription	Ovary	ovary
9	chr15:59888800-59889400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr15:59888800-59890000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr15:59889200-59892200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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