Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr15:58875309-58875855	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:58860510..58864232-chr15:58873033..58877399,5	K562	blood:
2	chr15:58860633..58862696-chr15:58874289..58877097,2	MCF-7	breast:
3	chr15:58874129..58875641-chr15:58886591..58888367,2	K562	blood:
4	chr15:58868577..58870503-chr15:58875385..58877365,2	K562	blood:

Variant related genes	Relation type
ENSG00000259250	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11638244	1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12594872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12899638	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12900643	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12912699	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1427282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1469343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs28864995	0.83[AFR][1000 genomes]
rs387812	1.00[CHB][hapmap]
rs395601	1.00[CHB][hapmap]
rs4275799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4775083	0.96[ASN][1000 genomes]
rs4775087	0.81[AFR][1000 genomes]
rs514049	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6494026	0.92[ASN][1000 genomes]
rs6494029	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs714696	0.81[AFR][1000 genomes]
rs7166356	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7171098	0.92[ASN][1000 genomes]
rs8035373	0.89[ASN][1000 genomes]
rs8043406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs972801	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58874600-58889200	Weak transcription	Small Intestine	intestine
2	chr15:58874800-58875800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr15:58874800-58877200	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search: