Variant report

Variant	rs7168915
Chromosome Location	chr15:79128889-79128890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11072810	0.93[GIH][hapmap]
rs11072812	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632020	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11637783	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11852830	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs11857877	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12232282	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12899147	0.88[CHB][hapmap]
rs12903203	0.86[CHB][hapmap]
rs12903249	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12903542	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12903613	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12903668	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12911870	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16970187	0.90[JPT][hapmap]
rs16970254	0.90[JPT][hapmap]
rs1994016	0.88[CHB][hapmap]
rs2277545	0.88[CHB][hapmap]
rs28580532	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34184420	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4132786	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4344704	0.91[EUR][1000 genomes]
rs4420501	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4421942	1.00[JPT][hapmap]
rs4438276	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4439728	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4539564	0.87[EUR][1000 genomes]
rs4551997	0.87[EUR][1000 genomes]
rs4567668	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5029904	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5849	0.90[JPT][hapmap]
rs6495337	0.86[EUR][1000 genomes]
rs6495339	0.87[EUR][1000 genomes]
rs6495340	0.87[EUR][1000 genomes]
rs7169511	0.87[EUR][1000 genomes]
rs7173743	0.95[GIH][hapmap];0.91[EUR][1000 genomes]
rs7178750	0.86[EUR][1000 genomes]
rs8024048	0.87[EUR][1000 genomes]
rs8030937	0.87[EUR][1000 genomes]
rs8032771	0.86[EUR][1000 genomes]
rs8032842	0.86[EUR][1000 genomes]
rs8034274	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8034804	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8035039	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8037171	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7168915	CPLX3	cis	cerebellum	SCAN
rs7168915	PSMA4	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79118400-79138400	Weak transcription	Right Atrium	heart
2	chr15:79123000-79130400	Weak transcription	Left Ventricle	heart
3	chr15:79124400-79130200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:79125200-79133000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:79125600-79130600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:79128400-79129000	Enhancers	Ovary	ovary
7	chr15:79128600-79129000	Enhancers	GM12878-XiMat	blood

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