Variant report

Variant	rs7169218
Chromosome Location	chr15:35283616-35283617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr15:35283505-35283935	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr15:35283556-35283833	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr15:35283562-35283807	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr15:35283600-35283750	K562	blood:	n/a	n/a
5	HDAC2	chr15:35283564-35283889	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr15:35283600-35283750	AG09319	gingival:	n/a	n/a
7	CTCF	chr15:35283600-35283750	AG10803	skin:	n/a	n/a
8	CTCF	chr15:35283600-35283750	HCM	heart:	n/a	n/a
9	RAD21	chr15:35283588-35283859	H1-hESC	embryonic stem cell:	n/a	n/a
10	FOS	chr15:35283601-35283996	MCF10A-Er-Src	breast:	n/a	chr15:35283727-35283736
11	CTCF	chr15:35283605-35283845	K562	blood:	n/a	n/a
12	CTCF	chr15:35283540-35283690	GM12873	blood:	n/a	n/a
13	CTCF	chr15:35283600-35283750	HRPEpiC	eye:	n/a	n/a
14	CTCF	chr15:35283600-35283750	SAEC	small airway:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35268400..35271114-chr15:35282983..35285387,2	MCF-7	breast:
2	chr15:35261639..35264057-chr15:35280199..35283795,4	MCF-7	breast:
3	chr15:35254953..35258057-chr15:35281639..35283964,3	K562	blood:
4	chr15:35282844..35285417-chr15:35840197..35842682,2	K562	blood:
5	chr15:35281928..35283666-chr15:35330259..35332871,2	K562	blood:
6	chr15:35276711..35279528-chr15:35281828..35283922,2	MCF-7	breast:
7	chr15:35005678..35008340-chr15:35281317..35283659,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259181	TF binding region
ZNF770	TF binding region
ENSG00000212768	Chromatin interaction
ENSG00000021776	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1037754	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35281000-35287600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35281200-35286200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:35281200-35289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:35281400-35286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:35281400-35286400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:35281400-35286600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:35281400-35299000	Weak transcription	Right Atrium	heart
8	chr15:35281600-35283800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:35281600-35286000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:35281800-35283800	Weak transcription	A549	lung
11	chr15:35281800-35285400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:35282000-35285400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:35282000-35285400	Weak transcription	Hela-S3	cervix
14	chr15:35282000-35285400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:35282200-35283800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:35283400-35284000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr15:35283400-35284000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:35283400-35284200	Enhancers	HMEC	breast
19	chr15:35283400-35284200	Enhancers	NHEK	skin
20	chr15:35283600-35283800	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:35283600-35283800	Enhancers	HepG2	liver
22	chr15:35283600-35284000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr15:35283600-35284000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:35283600-35284000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:35283600-35284000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:35283600-35284000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr15:35283600-35284000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:35283600-35284000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:35283600-35284000	Enhancers	K562	blood
30	chr15:35283600-35285000	Enhancers	GM12878-XiMat	blood

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