Variant report

Variant	rs7169606
Chromosome Location	chr15:42571503-42571504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42563158..42565885-chr15:42567865..42572400,4	MCF-7	breast:
2	chr15:42568840..42573155-chr15:42578082..42582332,4	K562	blood:
3	chr15:42564172..42566903-chr15:42569265..42571976,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214013	Chromatin interaction
ENSG00000103978	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16973054	1.00[YRI][hapmap]
rs28364440	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364448	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364463	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364467	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364476	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364479	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs28364516	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364543	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28745881	1.00[AMR][1000 genomes]
rs4344713	1.00[YRI][hapmap]
rs7170518	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182281	0.85[AFR][1000 genomes]
rs8035827	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv1807328	chr15:42525300-42573278	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42566400-42576000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:42566600-42575000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:42567000-42578600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:42567200-42573000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:42567200-42577200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:42567200-42577800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:42567200-42583800	Weak transcription	Fetal Kidney	kidney
8	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
9	chr15:42567600-42572400	Weak transcription	Fetal Thymus	thymus
10	chr15:42567600-42573000	Weak transcription	Esophagus	oesophagus
11	chr15:42567600-42578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:42567600-42579200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:42568200-42571600	Weak transcription	Colonic Mucosa	Colon
14	chr15:42568200-42571600	Weak transcription	Fetal Brain Female	brain
15	chr15:42568400-42574800	Weak transcription	Psoas Muscle	Psoas
16	chr15:42568400-42604600	Weak transcription	NH-A	brain
17	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
18	chr15:42568600-42571600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:42568600-42571600	Weak transcription	NHLF	lung
20	chr15:42568600-42572000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:42568600-42572600	Weak transcription	Fetal Intestine Small	intestine
22	chr15:42568600-42573000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:42568600-42573000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:42568600-42575000	Weak transcription	A549	lung
25	chr15:42568600-42581200	Weak transcription	HUVEC	blood vessel
26	chr15:42568600-42581400	Weak transcription	Stomach Mucosa	stomach
27	chr15:42568600-42583800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:42568600-42584600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:42568600-42584800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:42568600-42585000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr15:42568600-42585200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:42568600-42587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:42568600-42587000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:42568600-42593000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
36	chr15:42568600-42630800	Weak transcription	Dnd41	blood
37	chr15:42568800-42572800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:42568800-42575200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:42568800-42577400	Weak transcription	Hela-S3	cervix
40	chr15:42568800-42577800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:42568800-42583600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:42569000-42591000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:42569200-42572800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:42569200-42577200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:42569400-42577000	Strong transcription	Fetal Stomach	stomach
46	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:42570000-42576600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:42570200-42572200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:42570200-42573600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:42570200-42574000	Strong transcription	HSMM	muscle

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