Variant report

Variant	rs7169872
Chromosome Location	chr15:40819558-40819559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40818208..40820225-chr15:40824846..40826770,2	K562	blood:
2	chr15:40802752..40805307-chr15:40819242..40820883,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPUSD2-2	chr15:40817905-40821053	ucscGeneNc_uc001zqm_2

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11070276	0.81[EUR][1000 genomes]
rs12916218	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1530943	0.81[AFR][1000 genomes]
rs1869303	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2034653	0.85[AFR][1000 genomes]
rs2412528	0.82[AFR][1000 genomes]
rs2412533	0.81[EUR][1000 genomes]
rs2959535	0.86[AFR][1000 genomes]
rs2959547	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4924473	0.81[EUR][1000 genomes]
rs4924474	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4924476	0.81[EUR][1000 genomes]
rs589650	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs607118	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs617031	0.81[EUR][1000 genomes]
rs640919	0.81[EUR][1000 genomes]
rs7168927	0.81[EUR][1000 genomes]
rs8033739	0.81[EUR][1000 genomes]
rs8038350	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8040187	0.81[EUR][1000 genomes]
rs8043197	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9284288	0.81[EUR][1000 genomes]
rs9783737	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40804400-40821000	Weak transcription	Right Atrium	heart
2	chr15:40805200-40828200	Weak transcription	Placenta	Placenta
3	chr15:40805200-40833000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40812400-40820200	Weak transcription	Fetal Stomach	stomach
5	chr15:40812400-40828600	Weak transcription	Primary T cells from cord blood	blood
6	chr15:40812400-40828600	Weak transcription	Right Ventricle	heart
7	chr15:40812400-40828800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:40812400-40828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:40812400-40829000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:40812400-40829000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:40812400-40831000	Weak transcription	Thymus	Thymus
12	chr15:40812400-40837800	Weak transcription	Lung	lung
13	chr15:40812600-40826000	Weak transcription	Adipose Nuclei	Adipose
14	chr15:40812600-40826400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:40812600-40827000	Weak transcription	Spleen	Spleen
16	chr15:40812600-40831400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:40812600-40840600	Weak transcription	Hela-S3	cervix
18	chr15:40816200-40820600	Weak transcription	Fetal Intestine Small	intestine
19	chr15:40816600-40826200	Weak transcription	GM12878-XiMat	blood
20	chr15:40816800-40835000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:40816800-40845600	Weak transcription	Ovary	ovary
22	chr15:40817800-40819600	Enhancers	Pancreas	Pancrea
23	chr15:40817800-40821800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:40818200-40828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:40818400-40820600	Weak transcription	K562	blood
26	chr15:40818400-40828200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:40819200-40831200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:40819400-40828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:40819400-40830200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:40819400-40831200	Weak transcription	Gastric	stomach

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