Variant report

Variant	rs7172035
Chromosome Location	chr15:74415396-74415397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58915746	1.00[AMR][1000 genomes]
rs73431469	1.00[AMR][1000 genomes]
rs73431471	1.00[AMR][1000 genomes]
rs73432359	1.00[AMR][1000 genomes]
rs74023411	1.00[AMR][1000 genomes]
rs74023412	1.00[AMR][1000 genomes]
rs74023415	1.00[AMR][1000 genomes]
rs74023417	1.00[AMR][1000 genomes]
rs74023426	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1047564	chr15:74408836-74458181	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74413000-74416200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:74413000-74416200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:74413000-74418000	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:74413200-74415400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:74413400-74415400	Enhancers	Primary B cells from cord blood	blood
6	chr15:74413400-74415800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74413600-74416200	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:74414200-74416400	Enhancers	Fetal Thymus	thymus
9	chr15:74414200-74417400	Enhancers	Fetal Brain Male	brain
10	chr15:74414400-74416000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr15:74414400-74416000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr15:74414600-74415600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
13	chr15:74414600-74416000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:74414600-74416000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr15:74414600-74416000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr15:74414600-74416000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr15:74414600-74416000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:74414600-74416000	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr15:74414600-74416200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr15:74414600-74416400	Enhancers	Fetal Brain Female	brain
21	chr15:74414800-74415400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:74414800-74415800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr15:74414800-74415800	Enhancers	Primary T cells from cord blood	blood
24	chr15:74414800-74415800	Enhancers	Dnd41	blood
25	chr15:74414800-74416000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:74414800-74419800	Weak transcription	Spleen	Spleen
27	chr15:74415000-74415600	Enhancers	GM12878-XiMat	blood
28	chr15:74415000-74415800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:74415000-74415800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr15:74415000-74415800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr15:74415000-74416000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:74415000-74416000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:74415000-74416000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
34	chr15:74415000-74416000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:74415000-74416000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:74415000-74416600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr15:74415200-74415600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr15:74415200-74415800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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