Variant report

Variant	rs71722070
Chromosome Location	chr6:33920764-33920765
allele	lengthTooLong
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2495958	0.89[AFR][1000 genomes]
rs6907273	1.00[ASN][1000 genomes]
rs6909978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402426	1.00[ASN][1000 genomes]
rs73402428	1.00[ASN][1000 genomes]
rs73402430	1.00[ASN][1000 genomes]
rs73402434	1.00[ASN][1000 genomes]
rs73402449	1.00[ASN][1000 genomes]
rs7759010	1.00[ASN][1000 genomes]
rs9461935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469647	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469653	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469655	1.00[ASN][1000 genomes]
rs9469656	1.00[ASN][1000 genomes]
rs9469659	1.00[ASN][1000 genomes]
rs9688642	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3401257	chr6:33920046-33920806	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33918800-33924400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:33919200-33926200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33919600-33922200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33919600-33925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33920600-33920800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:33920600-33920800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:33920600-33920800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr6:33920600-33921000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:33920600-33921400	Enhancers	Fetal Brain Male	brain
10	chr6:33920600-33925400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links