Variant report

Variant	rs7172434
Chromosome Location	chr15:52441801-52441802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52421802..52423616-chr15:52441108..52442630,2	MCF-7	breast:
2	chr15:52310489..52312428-chr15:52441270..52443572,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069956	Chromatin interaction
ENSG00000259438	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16964735	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1054372	chr15:52369078-52579464	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv542387	chr15:52369078-52579464	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv833005	chr15:52389869-52541330	Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1047647	chr15:52425879-52469181	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52422600-52457600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:52423000-52458200	Weak transcription	Dnd41	blood
3	chr15:52429000-52446400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:52429000-52447200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr15:52429200-52447400	Strong transcription	Primary T cells from cord blood	blood
6	chr15:52429800-52470200	Weak transcription	Fetal Brain Male	brain
7	chr15:52430000-52442800	Weak transcription	Fetal Heart	heart
8	chr15:52430000-52445800	Weak transcription	Small Intestine	intestine
9	chr15:52430200-52442800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:52430200-52442800	Weak transcription	Right Ventricle	heart
11	chr15:52430200-52444800	Weak transcription	Left Ventricle	heart
12	chr15:52430200-52446600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:52430200-52457800	Weak transcription	Fetal Intestine Large	intestine
14	chr15:52431000-52446200	Strong transcription	Primary B cells from cord blood	blood
15	chr15:52431400-52446600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:52432200-52443000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:52432200-52445400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:52432200-52453800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:52432200-52455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:52432200-52455200	Weak transcription	Colonic Mucosa	Colon
21	chr15:52434800-52446400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr15:52435000-52446600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:52435400-52444200	Strong transcription	Fetal Stomach	stomach
24	chr15:52435400-52445600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:52435400-52446200	Strong transcription	Brain Germinal Matrix	brain
26	chr15:52435400-52446200	Strong transcription	Fetal Brain Female	brain
27	chr15:52435600-52445600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:52435800-52443800	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr15:52435800-52445800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:52436000-52444000	Strong transcription	Liver	Liver
31	chr15:52436000-52445600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:52436600-52442400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:52436600-52444200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:52436800-52446400	Weak transcription	Placenta	Placenta
35	chr15:52436800-52457200	Weak transcription	GM12878-XiMat	blood
36	chr15:52437200-52442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:52437200-52444000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:52437200-52444200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:52437200-52445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:52437200-52456800	Weak transcription	HSMM	muscle
41	chr15:52437400-52442800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:52437400-52443600	Weak transcription	HUVEC	blood vessel
43	chr15:52437400-52444400	Weak transcription	Osteobl	bone
44	chr15:52437400-52445000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:52437400-52445600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:52437400-52446800	Weak transcription	HSMMtube	muscle
47	chr15:52437400-52454000	Weak transcription	NH-A	brain
48	chr15:52437400-52454400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:52437800-52444000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:52437800-52444000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links