Variant report

Variant	rs7172997
Chromosome Location	chr15:58404503-58404504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58402876..58406319-chr15:58411755..58414973,3	K562	blood:
2	chr15:58213469..58215325-chr15:58403221..58404811,2	K562	blood:
3	chr15:58402733..58404852-chr15:58471216..58473457,2	K562	blood:
4	chr15:58402721..58405438-chr15:58406173..58409890,4	K562	blood:
5	chr15:58360768..58363074-chr15:58403366..58406297,2	K562	blood:
6	chr15:58402611..58405043-chr15:58470858..58473947,6	K562	blood:
7	chr15:58356241..58358717-chr15:58403285..58405338,4	K562	blood:
8	chr15:58370654..58372424-chr15:58402743..58405731,2	K562	blood:
9	chr15:58354852..58359954-chr15:58398987..58405153,11	K562	blood:
10	chr15:58402749..58406127-chr15:58406949..58409453,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10518965	0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28369432	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28410081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528925	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037406	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58402800-58404600	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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