Variant report

Variant	rs7173188
Chromosome Location	chr15:52118388-52118389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7168404	1.00[AMR][1000 genomes]
rs7173865	1.00[AMR][1000 genomes]
rs7178294	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52107200-52121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:52114000-52121200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:52114000-52121400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:52114000-52121600	Weak transcription	Aorta	Aorta
5	chr15:52114200-52121600	Weak transcription	Psoas Muscle	Psoas
6	chr15:52116600-52118800	Enhancers	NHEK	skin
7	chr15:52116600-52119200	Enhancers	Hela-S3	cervix
8	chr15:52117400-52118400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:52117400-52118800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:52117400-52118800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:52117400-52118800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:52117400-52118800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:52117400-52118800	Enhancers	HMEC	breast
14	chr15:52117600-52118800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:52117600-52121600	Weak transcription	NHDF-Ad	bronchial
16	chr15:52117800-52120800	Weak transcription	A549	lung
17	chr15:52118200-52120000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:52118200-52120400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:52118200-52121200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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