Variant report

Variant	rs7173215
Chromosome Location	chr15:57873204-57873205
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56071433	1.00[AMR][1000 genomes]
rs61559769	1.00[AMR][1000 genomes]
rs7168554	1.00[AFR][1000 genomes]
rs7169708	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57868000-57873800	Weak transcription	Fetal Lung	lung
2	chr15:57869800-57875000	Enhancers	Fetal Intestine Small	intestine
3	chr15:57869800-57875000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr15:57869800-57875200	Enhancers	Fetal Intestine Large	intestine
5	chr15:57870200-57873800	Enhancers	Duodenum Mucosa	Duodenum
6	chr15:57870800-57874800	Enhancers	Small Intestine	intestine
7	chr15:57871600-57874400	Enhancers	Gastric	stomach
8	chr15:57872200-57874600	Enhancers	Stomach Mucosa	stomach
9	chr15:57872400-57875000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr15:57872600-57873400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:57872600-57874600	Enhancers	Pancreas	Pancrea
12	chr15:57872600-57875000	Enhancers	Colonic Mucosa	Colon
13	chr15:57872600-57875000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr15:57872800-57875400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:57873000-57874000	Enhancers	Liver	Liver
16	chr15:57873200-57873400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
17	chr15:57873200-57873600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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