Variant report

Variant	rs7173286
Chromosome Location	chr15:59031008-59031009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58982751..58984795-chr15:59030172..59031707,2	K562	blood:
2	chr15:59030650..59032606-chr15:59033863..59036396,2	K562	blood:
3	chr15:59029800..59031905-chr15:59036907..59038822,2	K562	blood:
4	chr15:59030373..59033312-chr15:59035023..59037730,3	MCF-7	breast:
5	chr15:59028939..59031990-chr15:59040702..59043851,4	K562	blood:
6	chr15:59029139..59031905-chr15:59037322..59039865,2	K562	blood:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11071396	0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11852241	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11853043	0.84[YRI][hapmap]
rs12437552	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1365772	1.00[YRI][hapmap]
rs1427280	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs17236243	0.85[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2114573	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs2414606	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2414607	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28391588	0.92[CEU][hapmap];0.89[AMR][1000 genomes]
rs34546804	0.81[EUR][1000 genomes]
rs3933541	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs394845	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs447299	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4774309	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs655348	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs681711	0.85[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs694335	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7164053	0.80[EUR][1000 genomes]
rs7164844	0.80[EUR][1000 genomes]
rs7168275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7176436	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7179724	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs7182060	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7183504	0.90[AMR][1000 genomes]
rs8023706	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8027998	0.92[CEU][hapmap];0.90[AMR][1000 genomes]
rs8033478	0.80[EUR][1000 genomes]
rs8036097	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9646204	0.83[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9744045	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:59009800-59035400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:59010800-59031200	Weak transcription	Dnd41	blood
4	chr15:59016800-59034200	Weak transcription	Brain Germinal Matrix	brain
5	chr15:59017200-59034400	Weak transcription	Fetal Kidney	kidney
6	chr15:59022200-59040200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:59022600-59034800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:59022600-59038600	Weak transcription	Fetal Brain Female	brain
9	chr15:59023600-59040000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:59024000-59038200	Weak transcription	Fetal Stomach	stomach
11	chr15:59024200-59034600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:59024400-59032400	Weak transcription	Lung	lung
13	chr15:59024400-59035200	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:59024600-59031800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:59024600-59033200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:59024600-59034400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:59025600-59032200	Weak transcription	Placenta	Placenta
18	chr15:59025600-59032400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:59025600-59032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:59025600-59032400	Weak transcription	Right Ventricle	heart
21	chr15:59025600-59035200	Weak transcription	Psoas Muscle	Psoas
22	chr15:59025600-59038200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:59025600-59038200	Weak transcription	Gastric	stomach
24	chr15:59025600-59040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:59025800-59031200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:59025800-59032200	Weak transcription	Fetal Thymus	thymus
27	chr15:59025800-59033600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:59025800-59034400	Weak transcription	HSMMtube	muscle
29	chr15:59025800-59034600	Weak transcription	Thymus	Thymus
30	chr15:59025800-59034600	Weak transcription	Spleen	Spleen
31	chr15:59025800-59034800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:59026800-59039600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:59027000-59031200	Weak transcription	Left Ventricle	heart
34	chr15:59027000-59035000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:59027000-59035200	Enhancers	Primary T cells from cord blood	blood
36	chr15:59027000-59039800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr15:59027200-59035000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:59027400-59034800	Weak transcription	Right Atrium	heart
39	chr15:59027600-59031400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:59027600-59031400	Enhancers	NHEK	skin
41	chr15:59027600-59034000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:59027600-59037800	Weak transcription	Fetal Intestine Small	intestine
43	chr15:59027600-59038000	Weak transcription	Fetal Intestine Large	intestine
44	chr15:59027600-59040200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:59027800-59033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:59028000-59031200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr15:59028200-59032400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr15:59028400-59032600	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr15:59028400-59033000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr15:59029000-59031400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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