Variant report

Variant	rs7174348
Chromosome Location	chr15:78792439-78792440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78791381..78794333-chr15:78798862..78801849,3	MCF-7	breast:
2	chr15:78791030..78793547-chr15:78800208..78802171,2	MCF-7	breast:
3	chr15:78775973..78778928-chr15:78790506..78793354,2	K562	blood:
4	chr15:78791061..78794326-chr15:78831088..78834091,3	MCF-7	breast:
5	chr15:78786419..78789265-chr15:78791649..78793541,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHRNA3-5	chr15:78792408-78792890	NONHSAT047568

No data

Variant related genes	Relation type
ENSG00000041357	Chromatin interaction
ENSG00000136381	Chromatin interaction
ENSG00000188266	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10851906	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11072766	0.86[EUR][1000 genomes]
rs12101809	0.86[EUR][1000 genomes]
rs16969894	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2036529	0.81[EUR][1000 genomes]
rs2036533	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2568483	0.86[EUR][1000 genomes]
rs2568485	0.84[EUR][1000 genomes]
rs2568488	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2568490	0.86[EUR][1000 genomes]
rs2568493	0.86[EUR][1000 genomes]
rs2568497	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2568499	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2656055	0.84[EUR][1000 genomes]
rs2656069	0.86[EUR][1000 genomes]
rs2656071	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2656072	0.85[EUR][1000 genomes]
rs2656073	0.86[EUR][1000 genomes]
rs2656074	0.86[EUR][1000 genomes]
rs28480606	0.86[EUR][1000 genomes]
rs28511883	0.86[EUR][1000 genomes]
rs28602670	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2869032	0.83[EUR][1000 genomes]
rs2869045	0.84[EUR][1000 genomes]
rs2915695	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2938671	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2938674	0.86[EUR][1000 genomes]
rs2958719	0.86[EUR][1000 genomes]
rs35031105	0.86[EUR][1000 genomes]
rs4887053	0.80[EUR][1000 genomes]
rs7174190	0.85[EUR][1000 genomes]
rs924840	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs958025	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9672608	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7174348	IREB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78732200-78799400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:78751000-78793200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:78754600-78793400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:78754800-78793800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:78755000-78793800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:78755000-78794400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:78755200-78792600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:78755200-78793400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:78755200-78793600	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr15:78755200-78793800	Strong transcription	Fetal Thymus	thymus
11	chr15:78755200-78794000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:78755200-78794600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:78755400-78792600	Strong transcription	Fetal Muscle Leg	muscle
14	chr15:78755400-78793600	Strong transcription	Liver	Liver
15	chr15:78756000-78792800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:78756000-78793600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:78759000-78793000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:78759800-78793800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:78766000-78799200	Weak transcription	Fetal Heart	heart
20	chr15:78767800-78792600	Strong transcription	Primary T cells from cord blood	blood
21	chr15:78767800-78794200	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:78772400-78794600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:78774600-78792800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:78774800-78792600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:78774800-78793400	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:78775000-78793400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:78775400-78793600	Strong transcription	Osteobl	bone
28	chr15:78775400-78793800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:78775400-78794000	Strong transcription	Placenta	Placenta
30	chr15:78775600-78793800	Strong transcription	NH-A	brain
31	chr15:78775600-78794400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:78777000-78799400	Weak transcription	Gastric	stomach
33	chr15:78779200-78799000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr15:78779400-78799200	Weak transcription	Pancreas	Pancrea
35	chr15:78780000-78794200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:78782000-78794400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:78782200-78799200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:78784000-78793600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:78784800-78792600	Strong transcription	HepG2	liver
40	chr15:78784800-78794800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:78785200-78793600	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr15:78785600-78799200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:78785600-78799200	Weak transcription	Right Ventricle	heart
44	chr15:78785600-78799400	Weak transcription	Spleen	Spleen
45	chr15:78785800-78794600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:78785800-78799200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:78786600-78792600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:78787000-78794600	Strong transcription	Fetal Lung	lung
49	chr15:78787400-78794000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:78787400-78795000	Strong transcription	A549	lung

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