Variant report

Variant	rs7174467
Chromosome Location	chr15:33397748-33397749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16953725	1.00[AMR][1000 genomes]
rs16953727	1.00[AMR][1000 genomes]
rs16964818	1.00[AMR][1000 genomes]
rs16964833	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964835	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16965303	1.00[AMR][1000 genomes]
rs16965476	1.00[AMR][1000 genomes]
rs7165674	1.00[AMR][1000 genomes]
rs7168711	1.00[AMR][1000 genomes]
rs7169829	1.00[AMR][1000 genomes]
rs7171503	1.00[CHD][hapmap]
rs8024278	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33394800-33398400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr15:33395000-33397800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr15:33395000-33398200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:33395400-33398200	Enhancers	NHLF	lung
5	chr15:33395400-33398400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:33395600-33397800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:33395600-33397800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:33395600-33397800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr15:33395600-33397800	Enhancers	HSMM	muscle
10	chr15:33395600-33398200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:33395600-33398200	Enhancers	Dnd41	blood
12	chr15:33395800-33397800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:33396000-33398200	Enhancers	NHDF-Ad	bronchial
14	chr15:33396000-33398400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:33396400-33397800	Enhancers	Primary hematopoietic stem cells	blood
16	chr15:33396400-33398400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:33397000-33397800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:33397000-33398200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:33397000-33398400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:33397000-33398400	Enhancers	Fetal Thymus	thymus
21	chr15:33397000-33401200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:33397000-33402400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:33397000-33403000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:33397200-33397800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:33397200-33397800	Enhancers	HSMMtube	muscle
26	chr15:33397200-33398200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr15:33397200-33398400	Enhancers	Thymus	Thymus
28	chr15:33397200-33400200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:33397200-33403600	Weak transcription	Fetal Kidney	kidney
30	chr15:33397400-33397800	Enhancers	Osteobl	bone
31	chr15:33397400-33398400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr15:33397400-33400000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:33397600-33399600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:33397600-33399800	Weak transcription	Hela-S3	cervix
35	chr15:33397600-33406000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links