Variant report

Variant	rs7174976
Chromosome Location	chr15:56663907-56663908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:53)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:53 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr15:56663775-56664463	GM19193	blood:	n/a	n/a
2	NFATC1	chr15:56663642-56664447	GM12878	blood:	n/a	n/a
3	STAT3	chr15:56663876-56664421	GM12878	blood:	n/a	n/a
4	MEF2A	chr15:56663731-56664374	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:56663814-56664459	GM12892	blood:	n/a	n/a
6	RELA	chr15:56663868-56664376	GM15510	blood:	n/a	n/a
7	FOXM1	chr15:56663672-56664536	GM12878	blood:	n/a	n/a
8	SPI1	chr15:56663886-56664323	GM12891	blood:	n/a	n/a
9	MTA3	chr15:56663692-56664443	GM12878	blood:	n/a	n/a
10	BCL11A	chr15:56663906-56664378	GM12878	blood:	n/a	n/a
11	STAT5A	chr15:56663658-56664424	GM12878	blood:	n/a	n/a
12	ATF2	chr15:56663797-56664492	GM12878	blood:	n/a	n/a
13	BHLHE40	chr15:56663829-56664374	GM12878	blood:	n/a	n/a
14	BCL3	chr15:56663757-56664346	GM12878	blood:	n/a	n/a
15	TBL1XR1	chr15:56663717-56664770	GM12878	blood:	n/a	n/a
16	RELA	chr15:56663808-56664434	GM19099	blood:	n/a	n/a
17	RCOR1	chr15:56663685-56664371	GM12878	blood:	n/a	n/a
18	IRF4	chr15:56663847-56664320	GM12878	blood:	n/a	n/a
19	RELA	chr15:56663804-56664421	GM18505	blood:	n/a	n/a
20	NFATC1	chr15:56663622-56664431	GM12878	blood:	n/a	n/a
21	RUNX3	chr15:56663554-56664706	GM12878	blood:	n/a	n/a
22	MEF2A	chr15:56663662-56664526	GM12878	blood:	n/a	n/a
23	RELA	chr15:56663876-56664392	GM12892	blood:	n/a	n/a
24	PML	chr15:56663639-56664566	GM12878	blood:	n/a	n/a
25	PML	chr15:56663873-56664350	GM12878	blood:	n/a	n/a
26	BATF	chr15:56663904-56664369	GM12878	blood:	n/a	n/a
27	RUNX3	chr15:56663734-56664424	GM12878	blood:	n/a	n/a
28	SPI1	chr15:56663904-56664340	GM12878	blood:	n/a	n/a
29	MEF2C	chr15:56663814-56664491	GM12878	blood:	n/a	chr15:56664152-56664167
30	EP300	chr15:56663857-56664400	GM12878	blood:	n/a	n/a
31	MTA3	chr15:56663710-56664503	GM12878	blood:	n/a	n/a
32	IRF4	chr15:56663879-56664389	GM12878	blood:	n/a	n/a
33	EP300	chr15:56663880-56664367	GM12878	blood:	n/a	n/a
34	FOS	chr15:56663598-56664312	MCF10A-Er-Src	breast:	n/a	n/a
35	RELA	chr15:56663729-56664469	GM12878	blood:	n/a	n/a
36	SPI1	chr15:56663713-56664451	GM12878	blood:	n/a	n/a
37	EBF1	chr15:56663906-56664394	GM12878	blood:	n/a	n/a
38	RELA	chr15:56663868-56664417	GM12891	blood:	n/a	n/a
39	SPI1	chr15:56663850-56664383	GM12891	blood:	n/a	n/a
40	ATF2	chr15:56663598-56664493	GM12878	blood:	n/a	n/a
41	RELA	chr15:56663825-56664411	GM18951	blood:	n/a	n/a
42	CREB1	chr15:56663538-56664472	GM12878	blood:	n/a	n/a
43	CUX1	chr15:56663842-56664275	GM12878	blood:	n/a	n/a
44	RELA	chr15:56663724-56664667	GM10847	blood:	n/a	n/a
45	CEBPB	chr15:56663759-56664794	GM12878	blood:	n/a	n/a
46	NFIC	chr15:56662983-56664661	GM12878	blood:	n/a	n/a
47	FOXM1	chr15:56663764-56664518	GM12878	blood:	n/a	n/a
48	TBP	chr15:56663848-56664321	GM12878	blood:	n/a	n/a
49	SP1	chr15:56663894-56664424	GM12878	blood:	n/a	n/a
50	CHD2	chr15:56663900-56664357	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:56662303..56664925-chr15:56669257..56671232,2	MCF-7	breast:
2	chr15:56663360..56664228-chr20:52363663..52364657,2	MCF-7	breast:
3	chr15:56662948..56665522-chr15:56683951..56686718,2	MCF-7	breast:

No data

Variant related genes	Relation type
TEX9	TF binding region
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs36180338	1.00[AMR][1000 genomes]
rs57357634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61468920	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs705450	1.00[YRI][hapmap]
rs7169321	0.88[YRI][hapmap]
rs8024095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1046891	chr15:56659587-56792033	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56658200-56675400	Weak transcription	Pancreas	Pancrea
2	chr15:56658800-56669600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:56659400-56666800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:56659600-56664000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:56659600-56675400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:56659800-56664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:56660400-56674400	Weak transcription	Hela-S3	cervix
8	chr15:56661000-56671000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:56661800-56664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:56661800-56665200	Weak transcription	Small Intestine	intestine
11	chr15:56661800-56668400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:56662000-56666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:56662600-56664000	Weak transcription	Stomach Mucosa	stomach
14	chr15:56662600-56664800	Enhancers	Brain Germinal Matrix	brain
15	chr15:56663200-56664000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:56663400-56664400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:56663600-56664600	Active TSS	GM12878-XiMat	blood
18	chr15:56663800-56664400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:56663800-56664400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:56663800-56664400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:56663800-56664400	Enhancers	HMEC	breast

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