Variant report

Variant	rs7175036
Chromosome Location	chr15:56186414-56186415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56186114..56188918-chr15:56190868..56192433,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8024026	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761966	chr15:56167250-56192861	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3361699	chr15:56173709-56192307	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv569542	chr15:56185262-56210929	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56172800-56189600	Weak transcription	Placenta	Placenta
2	chr15:56175800-56189400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:56176000-56216200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:56176800-56186800	Weak transcription	NH-A	brain
5	chr15:56181600-56186600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:56181800-56188800	Weak transcription	HMEC	breast
7	chr15:56185000-56186600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:56185000-56189600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:56185200-56187800	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr15:56185400-56189600	Enhancers	Hela-S3	cervix
11	chr15:56186200-56186600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:56186200-56186600	Enhancers	NHEK	skin
13	chr15:56186200-56186600	Enhancers	Osteobl	bone
14	chr15:56186200-56186800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:56186200-56186800	Flanking Active TSS	GM12878-XiMat	blood
16	chr15:56186200-56186800	Enhancers	HSMM	muscle
17	chr15:56186200-56186800	Enhancers	HSMMtube	muscle
18	chr15:56186200-56187600	Active TSS	A549	lung
19	chr15:56186200-56188200	Active TSS	Psoas Muscle	Psoas
20	chr15:56186200-56188400	Enhancers	Primary T cells from cord blood	blood
21	chr15:56186200-56188400	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr15:56186400-56186600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:56186400-56186600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:56186400-56186800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr15:56186400-56186800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:56186400-56187000	Active TSS	NHDF-Ad	bronchial
27	chr15:56186400-56187600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr15:56186400-56187600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:56186400-56187600	Flanking Active TSS	HUVEC	blood vessel
30	chr15:56186400-56187800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:56186400-56187800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:56186400-56187800	Active TSS	Right Atrium	heart
33	chr15:56186400-56188000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:56186400-56189800	Weak transcription	Small Intestine	intestine

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