Variant report

Variant	rs7175502
Chromosome Location	chr15:93376866-93376867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93351184..93355052-chr15:93375113..93377984,5	K562	blood:
2	chr15:93375205..93376990-chr15:93441973..93445299,3	K562	blood:
3	chr15:93371732..93379797-chr15:93421101..93430677,25	MCF-7	breast:
4	chr15:93373507..93377167-chr15:93424435..93430746,9	K562	blood:
5	chr15:93372369..93377206-chr15:93423188..93427929,10	MCF-7	breast:
6	chr15:93369245..93370837-chr15:93374865..93377688,2	K562	blood:
7	chr15:93375453..93377764-chr15:93448296..93450344,2	MCF-7	breast:
8	chr15:93374787..93377707-chr15:93400327..93404783,5	MCF-7	breast:
9	chr15:93373815..93377537-chr15:93445679..93450174,4	MCF-7	breast:
10	chr15:93373694..93377076-chr15:93424499..93428126,7	K562	blood:
11	chr15:93373081..93377290-chr15:93381619..93384453,4	K562	blood:
12	chr15:93373667..93377360-chr15:93428226..93431143,5	K562	blood:
13	chr15:93351602..93357057-chr15:93373684..93377205,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000264173	Chromatin interaction
ENSG00000173575	Chromatin interaction
ENSG00000272888	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7172674	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93372600-93377400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr15:93373400-93377000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:93373400-93377400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr15:93374000-93377000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:93374200-93383200	Weak transcription	Lung	lung
6	chr15:93374400-93377000	Enhancers	Small Intestine	intestine
7	chr15:93374400-93377000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr15:93374800-93377400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:93375000-93377400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:93375000-93377400	Enhancers	Fetal Heart	heart
11	chr15:93375200-93377000	Enhancers	Stomach Mucosa	stomach
12	chr15:93375200-93377200	Enhancers	Brain Angular Gyrus	brain
13	chr15:93375200-93377200	Enhancers	Fetal Lung	lung
14	chr15:93375200-93377400	Enhancers	Fetal Intestine Small	intestine
15	chr15:93375200-93377400	Enhancers	Left Ventricle	heart
16	chr15:93375200-93377600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:93375400-93378000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:93375600-93377200	Flanking Active TSS	GM12878-XiMat	blood
19	chr15:93375600-93377400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:93375600-93377400	Enhancers	Brain Substantia Nigra	brain
21	chr15:93375600-93377400	Enhancers	Psoas Muscle	Psoas
22	chr15:93375800-93377000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:93375800-93377000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:93375800-93377000	Enhancers	Spleen	Spleen
25	chr15:93375800-93377400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:93375800-93377400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:93375800-93377400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:93375800-93377400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:93376000-93377000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:93376000-93377000	Enhancers	Colon Smooth Muscle	Colon
31	chr15:93376000-93377000	Enhancers	HMEC	breast
32	chr15:93376000-93377000	Enhancers	HSMMtube	muscle
33	chr15:93376000-93377000	Enhancers	NH-A	brain
34	chr15:93376000-93377000	Enhancers	NHDF-Ad	bronchial
35	chr15:93376000-93377200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:93376000-93377200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:93376000-93377200	Enhancers	Fetal Kidney	kidney
38	chr15:93376000-93377400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:93376000-93377400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:93376000-93377400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr15:93376000-93377400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr15:93376000-93377400	Enhancers	Brain Cingulate Gyrus	brain
43	chr15:93376000-93377400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:93376000-93377400	Enhancers	Fetal Muscle Leg	muscle
45	chr15:93376000-93377400	Enhancers	Pancreas	Pancrea
46	chr15:93376000-93377400	Enhancers	Right Atrium	heart
47	chr15:93376000-93377400	Enhancers	Thymus	Thymus
48	chr15:93376000-93377400	Enhancers	HepG2	liver
49	chr15:93376000-93377400	Enhancers	K562	blood
50	chr15:93376000-93378000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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