Variant report

Variant	rs7175979
Chromosome Location	chr15:43270122-43270123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3421859	chr15:43249285-43280570	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv904137	chr15:43268970-43392075	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv904138	chr15:43268970-43414673	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:43241600-43271000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:43241600-43271800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:43241800-43270800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr15:43242200-43270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr15:43244000-43276400	Weak transcription	Psoas Muscle	Psoas
7	chr15:43248000-43320600	Weak transcription	Stomach Mucosa	stomach
8	chr15:43249600-43283200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:43252400-43298400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:43252800-43295800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:43255200-43278800	Weak transcription	Esophagus	oesophagus
12	chr15:43258800-43277600	Weak transcription	Colonic Mucosa	Colon
13	chr15:43260200-43270600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr15:43260200-43270800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:43260600-43270400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:43260600-43270400	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:43260600-43270800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:43260600-43271000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:43260600-43271800	Strong transcription	Adipose Nuclei	Adipose
20	chr15:43261000-43277000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:43261800-43270800	Strong transcription	Primary T cells from cord blood	blood
22	chr15:43262400-43276800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr15:43262600-43270400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:43262600-43270600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:43262600-43270600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr15:43262600-43270800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:43262600-43270800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:43262600-43270800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr15:43262600-43270800	Strong transcription	Osteobl	bone
30	chr15:43262600-43271000	Strong transcription	HSMM	muscle
31	chr15:43262600-43271200	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:43262600-43272200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:43262600-43292000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr15:43262800-43270800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:43263000-43270400	Strong transcription	Primary B cells from cord blood	blood
36	chr15:43263200-43270800	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr15:43263400-43284000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:43264000-43283000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr15:43264200-43270400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr15:43264200-43270800	Strong transcription	Brain Anterior Caudate	brain
41	chr15:43264400-43270400	Strong transcription	GM12878-XiMat	blood
42	chr15:43264600-43270200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:43264800-43270400	Strong transcription	Brain Hippocampus Middle	brain
44	chr15:43264800-43270600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:43264800-43270800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:43265000-43270400	Strong transcription	Dnd41	blood
47	chr15:43265000-43270400	Strong transcription	K562	blood
48	chr15:43265000-43270600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:43265400-43270200	Strong transcription	Fetal Lung	lung
50	chr15:43265400-43275400	Strong transcription	NH-A	brain

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