Variant report

Variant	rs7176416
Chromosome Location	chr15:74694490-74694491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2734633	0.92[YRI][hapmap]
rs4887142	0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6495098	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495100	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7169858	0.88[YRI][hapmap]
rs741761	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs885740	0.81[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74675800-74695800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr15:74681600-74695600	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:74685000-74695000	Enhancers	HSMM	muscle
4	chr15:74685000-74695400	Weak transcription	Fetal Lung	lung
5	chr15:74685400-74699400	Weak transcription	Brain Substantia Nigra	brain
6	chr15:74685800-74694600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:74685800-74694800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:74686800-74695200	Enhancers	Primary B cells from cord blood	blood
9	chr15:74687400-74696200	Enhancers	NH-A	brain
10	chr15:74688000-74696800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr15:74688000-74699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:74688200-74694800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:74688200-74695200	Weak transcription	Right Atrium	heart
14	chr15:74688600-74695000	Enhancers	Primary hematopoietic stem cells	blood
15	chr15:74688800-74697000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr15:74689400-74702400	Weak transcription	Gastric	stomach
17	chr15:74689600-74698000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:74689800-74694800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:74690600-74694800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr15:74691600-74695000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:74691600-74695400	Enhancers	Placenta	Placenta
22	chr15:74691800-74694600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:74691800-74695400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:74691800-74695600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr15:74691800-74696600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr15:74691800-74697200	Flanking Active TSS	GM12878-XiMat	blood
27	chr15:74692000-74695600	Enhancers	Duodenum Mucosa	Duodenum
28	chr15:74692000-74695600	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr15:74692000-74696400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:74692000-74696400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:74692000-74701200	Enhancers	Spleen	Spleen
32	chr15:74692200-74694600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:74692600-74694600	Enhancers	NHEK	skin
34	chr15:74692800-74695000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr15:74692800-74695000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:74692800-74695200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:74692800-74695200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:74692800-74695400	Enhancers	Primary T cells from cord blood	blood
39	chr15:74692800-74695800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:74692800-74696400	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr15:74692800-74696400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr15:74692800-74696800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:74692800-74698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:74693400-74695600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:74693400-74696400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr15:74693600-74695000	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr15:74693600-74695000	Weak transcription	HSMMtube	muscle
48	chr15:74693600-74696400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:74693600-74697000	Enhancers	Fetal Muscle Leg	muscle
50	chr15:74693600-74699200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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