Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10851563	0.81[ASN][1000 genomes]
rs10851564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071065	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs11071066	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11630366	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs11635242	0.81[ASN][1000 genomes]
rs12900325	0.83[ASN][1000 genomes]
rs12901994	0.91[CHB][hapmap]
rs12903297	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12914912	0.81[JPT][hapmap]
rs2414285	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2414288	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs4774690	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4774691	0.80[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4776222	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs5025252	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs5027653	0.86[ASN][1000 genomes]
rs6493669	0.80[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6493670	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7169339	0.81[ASN][1000 genomes]
rs7170994	0.87[ASN][1000 genomes]
rs8034428	0.80[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs8038466	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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