Variant report

Variant	rs7177717
Chromosome Location	chr15:42218911-42218912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42217839..42220523-chr15:42226005..42227853,2	K562	blood:
2	chr15:42212123..42215123-chr15:42215453..42219644,4	K562	blood:
3	chr15:42217107..42219437-chr15:42264184..42266098,2	MCF-7	breast:
4	chr15:42212088..42214945-chr15:42215453..42219644,3	K562	blood:
5	chr15:42217369..42219216-chr15:42220643..42223205,3	MCF-7	breast:
6	chr15:42217980..42220140-chr15:42223299..42225570,2	K562	blood:
7	chr15:42209684..42211751-chr15:42216402..42218970,2	MCF-7	breast:
8	chr15:42186555..42188627-chr15:42217363..42219299,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259883	Chromatin interaction
ENSG00000246740	Chromatin interaction
ENSG00000174171	Chromatin interaction
ENSG00000103966	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12102194	1.00[EUR][1000 genomes]
rs16972234	0.85[AFR][1000 genomes]
rs16972239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972253	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972264	1.00[EUR][1000 genomes]
rs16972274	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs16972281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972286	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972405	1.00[EUR][1000 genomes]
rs17842096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626380	1.00[EUR][1000 genomes]
rs34424865	1.00[EUR][1000 genomes]
rs34807597	1.00[EUR][1000 genomes]
rs36126315	1.00[EUR][1000 genomes]
rs61281049	1.00[EUR][1000 genomes]
rs61736067	1.00[EUR][1000 genomes]
rs61741913	1.00[EUR][1000 genomes]
rs61748710	1.00[EUR][1000 genomes]
rs61753581	1.00[EUR][1000 genomes]
rs7173832	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176585	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180290	1.00[EUR][1000 genomes]
rs7182680	1.00[EUR][1000 genomes]
rs7182959	1.00[EUR][1000 genomes]
rs919142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
5	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
6	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42201200-42225400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:42202200-42225200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:42210600-42225400	Weak transcription	K562	blood
4	chr15:42210800-42221400	Weak transcription	Brain Angular Gyrus	brain
5	chr15:42210800-42230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:42211400-42219800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:42211600-42221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:42211600-42226200	Weak transcription	Thymus	Thymus
9	chr15:42211800-42220800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:42211800-42220800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:42211800-42221000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:42212000-42220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:42212000-42221000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:42212000-42224200	Weak transcription	Esophagus	oesophagus
15	chr15:42212000-42224400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:42212000-42225400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:42212800-42220200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:42213200-42221000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:42214000-42220000	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:42214000-42220000	Weak transcription	Fetal Kidney	kidney
21	chr15:42214000-42220200	Weak transcription	Fetal Stomach	stomach
22	chr15:42214000-42220800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:42214200-42220400	Weak transcription	Brain Anterior Caudate	brain
24	chr15:42214200-42220800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:42214200-42221000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:42214200-42221000	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:42214600-42219000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:42214800-42220800	Weak transcription	Ovary	ovary
29	chr15:42215000-42223800	Enhancers	Primary B cells from peripheral blood	blood
30	chr15:42215400-42221600	Enhancers	Primary B cells from cord blood	blood
31	chr15:42216000-42219400	Genic enhancers	GM12878-XiMat	blood
32	chr15:42216000-42220200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:42217000-42219200	Enhancers	Lung	lung
34	chr15:42217200-42219200	Enhancers	Right Atrium	heart
35	chr15:42217200-42219400	Enhancers	Placenta Amnion	Placenta Amnion
36	chr15:42217400-42219200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:42217400-42219200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:42217400-42219400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr15:42217400-42223200	Enhancers	Stomach Mucosa	stomach
40	chr15:42217400-42223800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:42217600-42219200	Genic enhancers	Fetal Muscle Leg	muscle
42	chr15:42217600-42219200	Enhancers	Left Ventricle	heart
43	chr15:42217600-42220800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:42217600-42224000	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr15:42217800-42219800	Enhancers	Primary T cells from cord blood	blood
46	chr15:42217800-42225400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:42217800-42225400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:42218000-42219000	Enhancers	Fetal Thymus	thymus
49	chr15:42218000-42219200	Enhancers	Placenta	Placenta
50	chr15:42218000-42219200	Enhancers	Right Ventricle	heart

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