Variant report

Variant	rs7178494
Chromosome Location	chr15:73597858-73597859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73596786..73598480-chr15:73926127..73928459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1479335	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2415143	0.82[EUR][1000 genomes]
rs8036434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
3	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
4	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
6	chr15:73577800-73598200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:73579200-73598200	Weak transcription	Psoas Muscle	Psoas
8	chr15:73581600-73598000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:73582000-73598000	Weak transcription	Fetal Heart	heart
10	chr15:73583400-73598400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:73584600-73598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:73585000-73599400	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:73585400-73599600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:73586800-73601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:73588400-73598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:73588600-73598200	Weak transcription	Hela-S3	cervix
17	chr15:73588600-73598600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:73588800-73601400	Strong transcription	Fetal Intestine Large	intestine
19	chr15:73588800-73601800	Strong transcription	Fetal Intestine Small	intestine
20	chr15:73591400-73598200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:73591400-73598600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:73593000-73598000	Strong transcription	Brain Germinal Matrix	brain
23	chr15:73593200-73598000	Strong transcription	Brain Cingulate Gyrus	brain
24	chr15:73593200-73601800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:73593200-73602000	Strong transcription	Aorta	Aorta
26	chr15:73593400-73598600	Weak transcription	A549	lung
27	chr15:73594200-73598200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:73595200-73598200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:73595400-73598200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:73595400-73598200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:73595400-73598200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:73595400-73598200	Weak transcription	Right Ventricle	heart
33	chr15:73595400-73598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:73595400-73600000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:73595400-73603800	Weak transcription	Spleen	Spleen
36	chr15:73595600-73598600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr15:73595600-73601600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
39	chr15:73596200-73598200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:73596200-73598600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:73596200-73599800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:73596400-73598000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:73596400-73598200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:73596400-73599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:73596600-73598000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr15:73596600-73598800	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr15:73596600-73599200	Weak transcription	Pancreas	Pancrea
49	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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