Variant report

Variant	rs7178526
Chromosome Location	chr15:75793303-75793304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75790680..75793556-chr15:75804189..75806502,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259931	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7168055	1.00[AMR][1000 genomes]
rs7172092	1.00[AMR][1000 genomes]
rs8024290	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs8024614	1.00[AFR][1000 genomes]
rs8029780	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv904387	chr15:75706296-75806911	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv904388	chr15:75730182-75804543	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
11	nsv904389	chr15:75739824-75806911	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv827390	chr15:75766087-75795370	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75749000-75797800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:75762200-75798000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:75762400-75797800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:75762400-75798000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:75763800-75797800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:75765600-75797800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:75766800-75798000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:75772000-75797800	Weak transcription	NHEK	skin
9	chr15:75772200-75794200	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:75772400-75797800	Weak transcription	Fetal Brain Male	brain
11	chr15:75772400-75797800	Weak transcription	Right Ventricle	heart
12	chr15:75772400-75797800	Weak transcription	Spleen	Spleen
13	chr15:75772400-75798000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:75775200-75795400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:75775200-75795400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr15:75775400-75795400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:75775800-75798000	Weak transcription	Fetal Heart	heart
18	chr15:75776000-75795400	Strong transcription	Fetal Stomach	stomach
19	chr15:75776200-75795400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:75777200-75794200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:75777200-75816800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr15:75777400-75794000	Weak transcription	HUVEC	blood vessel
23	chr15:75777600-75795400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:75777600-75812000	Weak transcription	Small Intestine	intestine
25	chr15:75778400-75795400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:75779000-75795000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:75779000-75795200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:75780200-75794600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:75780200-75797800	Weak transcription	Colonic Mucosa	Colon
30	chr15:75780200-75812200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:75780600-75797800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:75781000-75797800	Weak transcription	Pancreas	Pancrea
33	chr15:75782000-75794800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr15:75782000-75797800	Weak transcription	Left Ventricle	heart
35	chr15:75782600-75793600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:75782600-75797800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr15:75782600-75797800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:75782600-75797800	Weak transcription	NHDF-Ad	bronchial
39	chr15:75782600-75815200	Weak transcription	K562	blood
40	chr15:75782800-75793400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr15:75782800-75794000	Weak transcription	Fetal Thymus	thymus
42	chr15:75782800-75794200	Weak transcription	Ovary	ovary
43	chr15:75782800-75797800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:75782800-75797800	Weak transcription	Placenta	Placenta
45	chr15:75782800-75797800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:75782800-75797800	Weak transcription	GM12878-XiMat	blood
47	chr15:75783000-75793800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:75783200-75793800	Weak transcription	Thymus	Thymus
49	chr15:75783400-75793800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:75783400-75793800	Weak transcription	Brain Angular Gyrus	brain

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