Variant report

Variant	rs7179079
Chromosome Location	chr15:74501577-74501578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr15:74501152-74501846	Hela-S3	cervix:	n/a	n/a
2	EP300	chr15:74501315-74501989	SK-N-SH_RA	brain:	n/a	chr15:74501920-74501934
3	EP300	chr15:74501306-74501704	H1-hESC	embryonic stem cell:	n/a	n/a
4	RAD21	chr15:74501339-74501912	SK-N-SH_RA	brain:	n/a	n/a
5	ELF1	chr15:74500852-74501787	GM12878	blood:	n/a	n/a
6	CHD2	chr15:74501368-74501678	Hela-S3	cervix:	n/a	chr15:74501387-74501397
7	GTF2F1	chr15:74501357-74501823	H1-hESC	embryonic stem cell:	n/a	n/a
8	EBF1	chr15:74501537-74502063	GM12878	blood:	n/a	chr15:74501887-74501897 chr15:74501887-74501896 chr15:74501885-74501898
9	ZNF143	chr15:74501338-74502037	H1-hESC	embryonic stem cell:	n/a	n/a
10	GATA3	chr15:74501436-74502184	SK-N-SH	brain:	n/a	chr15:74502114-74502124
11	SP1	chr15:74501274-74501701	HepG2	liver:	n/a	chr15:74501473-74501482 chr15:74501415-74501429 chr15:74501561-74501571 chr15:74501472-74501482
12	YY1	chr15:74501433-74501810	SK-N-SH_RA	brain:	n/a	n/a
13	GTF2F1	chr15:74501443-74501580	Hela-S3	cervix:	n/a	n/a
14	EBF1	chr15:74501527-74502044	GM12878	blood:	n/a	chr15:74501887-74501897 chr15:74501887-74501896 chr15:74501885-74501898
15	TCF12	chr15:74501199-74502189	SK-N-SH	brain:	n/a	chr15:74501421-74501431
16	RXRA	chr15:74501376-74502056	SK-N-SH	brain:	n/a	chr15:74501894-74501903 chr15:74501920-74501929
17	POLR2A	chr15:74501335-74501713	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr15:74501193-74501726	K562	blood:	n/a	n/a
19	RAD21	chr15:74501291-74501661	H1-hESC	embryonic stem cell:	n/a	n/a
20	TBP	chr15:74501369-74501801	H1-hESC	embryonic stem cell:	n/a	n/a
21	TCF12	chr15:74501272-74501954	ECC-1	luminal epithelium:	n/a	chr15:74501421-74501431
22	TCF12	chr15:74501295-74501735	H1-hESC	embryonic stem cell:	n/a	chr15:74501421-74501431
23	MAX	chr15:74500868-74501674	H1-hESC	embryonic stem cell:	n/a	n/a
24	RUNX3	chr15:74501409-74501995	GM12878	blood:	n/a	n/a
25	PBX3	chr15:74501468-74502069	SK-N-SH	brain:	n/a	n/a
26	SMC3	chr15:74501524-74501705	Hela-S3	cervix:	n/a	n/a
27	PBX3	chr15:74501408-74502069	SK-N-SH	brain:	n/a	n/a
28	EBF1	chr15:74501569-74501979	GM12878	blood:	n/a	chr15:74501887-74501897 chr15:74501887-74501896 chr15:74501885-74501898
29	TCF12	chr15:74501168-74502073	ECC-1	luminal epithelium:	n/a	chr15:74501421-74501431
30	SP1	chr15:74501169-74501963	H1-hESC	embryonic stem cell:	n/a	chr15:74501473-74501482 chr15:74501415-74501429 chr15:74501561-74501571 chr15:74501472-74501482
31	EP300	chr15:74501280-74501597	HepG2	liver:	n/a	n/a
32	TCF7L2	chr15:74501127-74501720	HCT-116	colon:	n/a	n/a
33	MAZ	chr15:74501331-74501663	Hela-S3	cervix:	n/a	n/a
34	SIN3A	chr15:74501147-74501658	H1-hESC	embryonic stem cell:	n/a	chr15:74501268-74501277 chr15:74501343-74501352
35	YY1	chr15:74501294-74501864	H1-hESC	embryonic stem cell:	n/a	n/a
36	RUNX3	chr15:74501394-74502020	GM12878	blood:	n/a	n/a
37	EP300	chr15:74501283-74502031	SK-N-SH_RA	brain:	n/a	chr15:74501920-74501934
38	EP300	chr15:74501328-74502133	SK-N-SH	brain:	n/a	chr15:74501920-74501934
39	SP1	chr15:74501337-74501716	H1-hESC	embryonic stem cell:	n/a	chr15:74501473-74501482 chr15:74501415-74501429 chr15:74501561-74501571 chr15:74501472-74501482
40	ELK1	chr15:74501566-74501607	Hela-S3	cervix:	n/a	n/a
41	RAD21	chr15:74501423-74501638	SK-N-SH_RA	brain:	n/a	n/a
42	NFIC	chr15:74501281-74501970	ECC-1	luminal epithelium:	n/a	n/a
43	ZNF263	chr15:74499722-74503415	HEK293-T-REx	kidney:	n/a	chr15:74500444-74500453 chr15:74500769-74500778 chr15:74500441-74500450
44	POLR2A	chr15:74501453-74501588	H1-hESC	embryonic stem cell:	n/a	n/a
45	TEAD4	chr15:74501335-74502175	SK-N-SH	brain:	n/a	n/a
46	NFIC	chr15:74501538-74502061	GM12878	blood:	n/a	n/a
47	MAX	chr15:74501450-74501644	Hela-S3	cervix:	n/a	n/a
48	TCF12	chr15:74501301-74502135	SK-N-SH	brain:	n/a	chr15:74501421-74501431
49	CTBP2	chr15:74500984-74501957	H1-hESC	embryonic stem cell:	n/a	n/a
50	E2F6	chr15:74500794-74501698	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:74501549-74501599	SK-N-MC	brain:	n/a
2	chr15:74501549-74501599	Jurkat	blood:	n/a
3	chr15:74501549-74501599	AG09319	gingival:	n/a
4	chr15:74501549-74501599	HAEpiC	amniotic membrane:	n/a
5	chr15:74501549-74501599	RPTEC	kidney:	n/a
6	chr15:74501549-74501599	HCM	heart:	n/a
7	chr15:74501549-74501599	A549	lung:	n/a
8	chr15:74501549-74501599	Hela-S3	cervix:	n/a
9	chr15:74501549-74501599	HCF	heart:	n/a
10	chr15:74501549-74501599	H1-hESC	embryonic stem cell:	embryo
11	chr15:74501549-74501599	BJ	skin:	n/a
12	chr15:74501549-74501599	PrEC	prostate:	n/a
13	chr15:74501549-74501599	AG04449	skin:	fetal
14	chr15:74501549-74501599	K562	blood:	n/a
15	chr15:74501549-74501599	HPAEpiC	pulmonary alveolar:	n/a
16	chr15:74501549-74501599	SAEC	small airway:	n/a
17	chr15:74501549-74501599	T-47D	breast:	n/a
18	chr15:74501549-74501599	CMK	blood:	n/a
19	chr15:74501549-74501599	NT2-D1	testis:	n/a
20	chr15:74501549-74501599	HL-60	blood:	n/a
21	chr15:74501549-74501599	NH-A	brain:	n/a
22	chr15:74501549-74501599	Hepatocyte	liver:	n/a
23	chr15:74501549-74501599	BE2_C	brain:	n/a
24	chr15:74501549-74501599	HCPEpiC	choroid plexus:	n/a
25	chr15:74501549-74501599	HMEC	breast:	n/a
26	chr15:74501549-74501599	NB4	blood:	n/a
27	chr15:74501549-74501599	MCF10A-Er-Src	breast:	n/a
28	chr15:74501549-74501599	LNCaP	prostate:	n/a
29	chr15:74501549-74501599	GM19239	blood:	n/a
30	chr15:74501549-74501599	HEK293	kidney:	embryo
31	chr15:74501549-74501599	HCT-116	colon:	n/a
32	chr15:74501549-74501599	HNPCEpiC	eye:	n/a
33	chr15:74501549-74501599	GM12891	blood:	n/a
34	chr15:74501549-74501599	GM12878	blood:	n/a
35	chr15:74501549-74501599	NHDF-neo	bronchial:	n/a
36	chr15:74501549-74501599	AG04450	lung:	fetal
37	chr15:74501549-74501599	PANC-1	pancreas:	n/a
38	chr15:74501549-74501599	HRPEpiC	eye:	n/a
39	chr15:74501549-74501599	MCF-7	breast:	n/a
40	chr15:74501549-74501599	GM06990	blood:	n/a
41	chr15:74501549-74501599	SK-N-SH_RA	brain:	n/a
42	chr15:74501549-74501599	U87	brain:	n/a
43	chr15:74501549-74501599	HepG2	liver:	n/a
44	chr15:74501549-74501599	Caco-2	colon:	n/a
45	chr15:74501549-74501599	AG09309	skin:	n/a
46	chr15:74501549-74501599	PFSK-1	brain:	n/a
47	chr15:74501549-74501599	ovcar-3	ovarian:	n/a
48	chr15:74501549-74501599	ECC-1	luminal epithelium:	n/a
49	chr15:74501549-74501599	GM12892	blood:	n/a
50	chr15:74501549-74501599	SK-N-SH	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:74500084..74502169-chr15:74610783..74612337,2	K562	blood:
2	chr15:74494443..74497074-chr15:74501503..74504271,2	K562	blood:
3	chr15:74494408..74497236-chr15:74500706..74502894,2	MCF-7	breast:

Variant related genes	Relation type
STRA6	TF binding region
STRA6	CpG island
ENSG00000259264	Chromatin interaction
ENSG00000137868	Chromatin interaction
ENSG00000140481	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11857410	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74489200-74509600	Weak transcription	Gastric	stomach
2	chr15:74491000-74503200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:74492600-74503200	Enhancers	Fetal Muscle Leg	muscle
4	chr15:74496800-74501600	Weak transcription	A549	lung
5	chr15:74497000-74505800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:74497600-74502000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:74498000-74502600	Enhancers	Fetal Intestine Small	intestine
8	chr15:74498200-74501600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:74498400-74506000	Weak transcription	Left Ventricle	heart
10	chr15:74498800-74503200	Enhancers	Fetal Stomach	stomach
11	chr15:74499000-74503400	Enhancers	NH-A	brain
12	chr15:74499200-74502400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74499200-74503600	Enhancers	Fetal Heart	heart
14	chr15:74499400-74502200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr15:74499800-74504400	Enhancers	GM12878-XiMat	blood
16	chr15:74500000-74501600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr15:74500000-74503000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:74500200-74503200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:74500200-74506000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:74500400-74502400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:74500600-74501800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr15:74500600-74502200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:74500600-74502200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:74500600-74502200	Flanking Active TSS	Hela-S3	cervix
25	chr15:74500600-74506000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:74500800-74501800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:74500800-74502400	Enhancers	Fetal Intestine Large	intestine
28	chr15:74500800-74503000	Enhancers	Fetal Lung	lung
29	chr15:74500800-74503400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr15:74500800-74503800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr15:74501000-74501800	Bivalent Enhancer	Placenta	Placenta
32	chr15:74501000-74501800	Enhancers	HSMM	muscle
33	chr15:74501000-74502000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:74501000-74502200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:74501000-74502200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:74501000-74502200	Enhancers	Pancreas	Pancrea
37	chr15:74501000-74502600	Enhancers	Right Atrium	heart
38	chr15:74501000-74503400	Enhancers	Fetal Brain Female	brain
39	chr15:74501200-74501600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr15:74501200-74501800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
41	chr15:74501200-74502000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr15:74501200-74502200	Flanking Active TSS	HepG2	liver
43	chr15:74501200-74502400	Flanking Active TSS	Fetal Thymus	thymus
44	chr15:74501200-74502400	Enhancers	Placenta Amnion	Placenta Amnion
45	chr15:74501200-74502800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr15:74501200-74503000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:74501200-74504400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:74501200-74507400	Weak transcription	Spleen	Spleen
49	chr15:74501400-74501600	Enhancers	HSMMtube	muscle
50	chr15:74501400-74501800	Enhancers	HUES64 Cell Line	embryonic stem cell

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