Variant report

Variant	rs7179171
Chromosome Location	chr15:78697851-78697852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78665803..78668679-chr15:78697732..78701698,4	MCF-7	breast:
2	chr15:78631534..78633106-chr15:78696326..78697874,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2009293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4503760	0.94[CEU][hapmap]
rs4887049	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887050	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887052	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55642616	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55832521	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62010380	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62010386	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62010387	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7183387	0.82[EUR][1000 genomes]
rs8042381	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78667600-78704400	Weak transcription	Lung	lung
2	chr15:78688000-78703800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:78692400-78705200	Weak transcription	Spleen	Spleen
4	chr15:78696200-78699000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:78696400-78698000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:78696400-78698200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:78697400-78698200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr15:78697600-78698000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:78697600-78698000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr15:78697600-78698000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:78697600-78698000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:78697600-78698000	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr15:78697600-78698000	Bivalent Enhancer	Fetal Stomach	stomach
14	chr15:78697600-78698000	Enhancers	Right Ventricle	heart
15	chr15:78697600-78698200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:78697600-78698200	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr15:78697600-78698200	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr15:78697600-78698400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:78697600-78699000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:78697800-78698000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr15:78697800-78698000	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr15:78697800-78698000	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr15:78697800-78698000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:78697800-78698200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
25	chr15:78697800-78698200	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr15:78697800-78698200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr15:78697800-78698200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:78697800-78699400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr15:78697800-78700000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:78697800-78701600	Weak transcription	Right Atrium	heart

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