Variant report

Variant	rs7179527
Chromosome Location	chr15:51202066-51202067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51056442..51059084-chr15:51199726..51202707,2	MCF-7	breast:
2	chr15:51171477..51173642-chr15:51201316..51203040,2	K562	blood:
3	chr15:50977828..50980537-chr15:51197788..51202411,5	MCF-7	breast:
4	chr15:50645261..50648746-chr15:51197475..51202828,11	MCF-7	breast:
5	chr15:50647013..50649194-chr15:51198882..51202798,3	K562	blood:
6	chr15:51201141..51202699-chr15:51202955..51205782,2	K562	blood:
7	chr15:50925249..50927102-chr15:51201168..51202804,2	MCF-7	breast:
8	chr15:51199980..51202368-chr15:51206159..51208700,2	MCF-7	breast:
9	chr15:50715051..50716792-chr15:51200047..51202504,2	MCF-7	breast:
10	chr15:50977199..50981459-chr15:51198510..51202863,6	K562	blood:
11	chr15:50715057..50718112-chr15:51199966..51202837,4	MCF-7	breast:
12	chr15:51201141..51203041-chr15:51203150..51205782,2	K562	blood:
13	chr15:50645553..50650972-chr15:51199033..51203961,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138592	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000081014	Chromatin interaction
ENSG00000243027	Chromatin interaction
ENSG00000092439	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1135397	0.85[AFR][1000 genomes]
rs1147132	0.85[AFR][1000 genomes]
rs1147134	0.85[AFR][1000 genomes]
rs1147138	0.85[AFR][1000 genomes]
rs12050528	0.85[AFR][1000 genomes]
rs12591438	0.82[AFR][1000 genomes]
rs12904435	0.80[AFR][1000 genomes]
rs2574754	0.85[AFR][1000 genomes]
rs2614762	0.85[AFR][1000 genomes]
rs2614788	0.85[AFR][1000 genomes]
rs2619689	0.85[AFR][1000 genomes]
rs2619690	0.85[AFR][1000 genomes]
rs2619696	0.82[AFR][1000 genomes]
rs2663530	0.85[AFR][1000 genomes]
rs2663531	0.85[AFR][1000 genomes]
rs2663532	0.85[AFR][1000 genomes]
rs2663540	0.85[AFR][1000 genomes]
rs2663542	0.85[AFR][1000 genomes]
rs58909326	0.91[AFR][1000 genomes]
rs59486015	1.00[AFR][1000 genomes]
rs7178380	0.94[AFR][1000 genomes]
rs8043017	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
9	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv569403	chr15:51191421-51304373	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv1038778	chr15:51196641-51356728	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51199000-51202400	Active TSS	GM12878-XiMat	blood
2	chr15:51199200-51202200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:51199200-51202600	Active TSS	Esophagus	oesophagus
4	chr15:51199600-51202200	Active TSS	Fetal Intestine Small	intestine
5	chr15:51199600-51202600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:51199600-51202600	Active TSS	HSMMtube	muscle
7	chr15:51199600-51202800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr15:51199600-51202800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:51199800-51202200	Active TSS	Fetal Intestine Large	intestine
10	chr15:51199800-51202200	Active TSS	Gastric	stomach
11	chr15:51199800-51202200	Active TSS	Thymus	Thymus
12	chr15:51199800-51202400	Active TSS	HSMM	muscle
13	chr15:51199800-51202400	Active TSS	Osteobl	bone
14	chr15:51199800-51202600	Active TSS	A549	lung
15	chr15:51199800-51203000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:51200000-51202200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr15:51200000-51202200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:51200000-51202200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:51200000-51202200	Active TSS	Muscle Satellite Cultured Cells	--
20	chr15:51200000-51202200	Active TSS	Fetal Kidney	kidney
21	chr15:51200000-51202200	Active TSS	Fetal Lung	lung
22	chr15:51200000-51202200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr15:51200000-51202200	Active TSS	HMEC	breast
24	chr15:51200000-51202200	Active TSS	NHLF	lung
25	chr15:51200000-51202400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:51200200-51202400	Active TSS	NHEK	skin
27	chr15:51200600-51202200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:51201200-51202200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr15:51201200-51202200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr15:51201400-51202200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:51201400-51202200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:51201400-51202200	Weak transcription	Spleen	Spleen
33	chr15:51201400-51202400	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr15:51201400-51203800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr15:51201600-51202200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr15:51201600-51202800	Flanking Active TSS	Placenta	Placenta
37	chr15:51201600-51203200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:51201600-51212000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:51201600-51243200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:51201600-51245000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:51201800-51202200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:51201800-51202200	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr15:51201800-51202200	Active TSS	Primary T cells from cord blood	blood
44	chr15:51201800-51202200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr15:51201800-51202200	Enhancers	Brain Cingulate Gyrus	brain
46	chr15:51201800-51202200	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr15:51201800-51202200	Active TSS	Duodenum Mucosa	Duodenum
48	chr15:51201800-51202200	Active TSS	Fetal Brain Female	brain
49	chr15:51201800-51202200	Enhancers	Rectal Smooth Muscle	rectum
50	chr15:51201800-51202400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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