Variant report

Variant	rs7179718
Chromosome Location	chr15:92551007-92551008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17644334	0.80[AFR][1000 genomes]
rs2030208	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904498	chr15:92545284-92558234	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
3	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr15:92543000-92552400	Weak transcription	Pancreas	Pancrea
5	chr15:92544200-92554800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:92544400-92554800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:92544800-92551200	Weak transcription	Ovary	ovary
8	chr15:92544800-92552400	Weak transcription	Spleen	Spleen
9	chr15:92544800-92554200	Weak transcription	Fetal Brain Female	brain
10	chr15:92544800-92554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:92545400-92554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:92545600-92552400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:92546400-92551800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:92547000-92553400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:92547200-92552000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:92547400-92552400	Weak transcription	Psoas Muscle	Psoas
17	chr15:92547400-92553000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:92547400-92553000	Weak transcription	Right Ventricle	heart
19	chr15:92547600-92551400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:92547600-92552400	Weak transcription	Lung	lung
21	chr15:92547600-92552600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:92547600-92555000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:92548200-92554200	Weak transcription	Primary T cells from cord blood	blood
24	chr15:92548400-92551400	Weak transcription	Fetal Heart	heart
25	chr15:92548600-92551800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:92549000-92552400	Weak transcription	Esophagus	oesophagus
27	chr15:92549000-92554800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:92549200-92554200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:92549200-92554600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:92549200-92555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:92549400-92551200	Weak transcription	Left Ventricle	heart
32	chr15:92549400-92551600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:92549400-92552400	Weak transcription	Right Atrium	heart
34	chr15:92549400-92554800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:92549600-92553400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:92549600-92554200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:92549600-92554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:92549600-92555400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:92549800-92551200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:92549800-92553400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:92549800-92554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:92549800-92555000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:92550200-92553400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:92550200-92553600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:92550400-92556200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr15:92550600-92551400	Weak transcription	Brain Angular Gyrus	brain
47	chr15:92550600-92555000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:92550800-92551200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:92550800-92551600	Weak transcription	Brain Substantia Nigra	brain
50	chr15:92550800-92552200	Weak transcription	Brain Anterior Caudate	brain

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