Variant report

Variant	rs7179785
Chromosome Location	chr15:55488686-55488687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55484699..55490442-chr15:55579270..55584640,8	K562	blood:
2	chr15:55487401..55489256-chr15:55698750..55700399,2	MCF-7	breast:
3	chr15:55486571..55489386-chr15:55698193..55701285,4	K562	blood:
4	chr15:55488451..55490602-chr15:55640573..55642962,2	MCF-7	breast:
5	chr15:55485508..55492313-chr15:55579801..55583590,12	K562	blood:
6	chr15:54266407..54270072-chr15:55486535..55491034,4	MCF-7	breast:
7	chr15:55485173..55489207-chr15:55609824..55611374,3	K562	blood:

Variant related genes	Relation type
ENSG00000225973	Chromatin interaction
ENSG00000069974	Chromatin interaction
ENSG00000069943	Chromatin interaction
ENSG00000260916	Chromatin interaction
ENSG00000259669	Chromatin interaction
ENSG00000261652	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2414404	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435858	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4307894	1.00[MEX][hapmap]
rs61023306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493773	1.00[MEX][hapmap]
rs74015503	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018312	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55485600-55490600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:55486600-55488800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:55486600-55490000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:55486800-55490000	Active TSS	Psoas Muscle	Psoas
5	chr15:55487000-55489000	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr15:55487000-55489800	Active TSS	Colonic Mucosa	Colon
7	chr15:55487000-55490000	Active TSS	NHLF	lung
8	chr15:55487200-55490000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:55487200-55490200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:55487400-55489600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:55487400-55490000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr15:55487400-55490200	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr15:55487400-55490200	Active TSS	Right Atrium	heart
14	chr15:55487600-55489200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr15:55487600-55490000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:55487600-55490000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:55487600-55490000	Active TSS	Fetal Brain Female	brain
18	chr15:55487600-55490200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:55487600-55490400	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:55487800-55489800	Active TSS	Placenta Amnion	Placenta Amnion
21	chr15:55487800-55490000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:55487800-55490000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr15:55487800-55490000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:55487800-55490000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:55487800-55490000	Active TSS	Fetal Intestine Small	intestine
26	chr15:55487800-55490000	Active TSS	Ovary	ovary
27	chr15:55487800-55490000	Active TSS	HSMMtube	muscle
28	chr15:55487800-55490200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:55487800-55490200	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr15:55487800-55490200	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr15:55487800-55490200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:55487800-55490200	Active TSS	Right Ventricle	heart
33	chr15:55487800-55490400	Active TSS	K562	blood
34	chr15:55488000-55489400	Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr15:55488000-55489400	Active TSS	Hela-S3	cervix
36	chr15:55488000-55489600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:55488000-55489600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:55488000-55489600	Bivalent/Poised TSS	HepG2	liver
39	chr15:55488000-55489800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:55488000-55489800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:55488000-55489800	Active TSS	Muscle Satellite Cultured Cells	--
42	chr15:55488000-55489800	Active TSS	Colon Smooth Muscle	Colon
43	chr15:55488000-55489800	Active TSS	Fetal Thymus	thymus
44	chr15:55488000-55489800	Active TSS	Small Intestine	intestine
45	chr15:55488000-55489800	Active TSS	NHDF-Ad	bronchial
46	chr15:55488000-55490000	Active TSS	H1 Cell Line	embryonic stem cell
47	chr15:55488000-55490000	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr15:55488000-55490000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:55488000-55490000	Active TSS	Primary T cells fromperipheralblood	blood
50	chr15:55488000-55490000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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