Variant report

Variant	rs7179825
Chromosome Location	chr15:31747791-31747792
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:31747720-31747870	GM12872	blood:	n/a	n/a
2	CTCF	chr15:31747780-31747930	HCFaa	heart:	n/a	n/a
3	CTCF	chr15:31747780-31747930	HBMEC	blood vessel:	n/a	n/a
4	ZNF143	chr15:31747767-31747999	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr15:31747780-31747930	HEK293	kidney:	n/a	n/a
6	CTCF	chr15:31747740-31747890	Caco-2	colon:	n/a	n/a
7	RAD21	chr15:31747738-31748026	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr15:31747780-31747930	GM12868	blood:	n/a	n/a
9	CTCF	chr15:31747780-31747930	AG04450	lung:	n/a	n/a
10	CTCF	chr15:31747720-31747870	GM12878	blood:	n/a	n/a
11	CTCF	chr15:31747680-31747830	AG04450	lung:	n/a	n/a
12	CTCF	chr15:31747780-31747930	AG10803	skin:	n/a	n/a
13	CTCF	chr15:31747780-31747930	GM12873	blood:	n/a	n/a
14	CTCF	chr15:31747760-31747910	HCT-116	colon:	n/a	n/a
15	CTCF	chr15:31747711-31748052	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr15:31747780-31747930	WI-38	lung:	n/a	n/a
17	CTCF	chr15:31747780-31747930	HRPEpiC	eye:	n/a	n/a
18	CTCF	chr15:31747780-31747930	HFF-Myc	foreskin:	n/a	n/a
19	CTCF	chr15:31747720-31747870	WI-38	lung:	n/a	n/a
20	CTCF	chr15:31747680-31747830	BE2_C	brain:	n/a	n/a
21	CTCF	chr15:31747780-31747930	HRE	kidney:	n/a	n/a
22	CTCF	chr15:31747740-31747890	A549	lung:	n/a	n/a
23	CTCF	chr15:31747740-31747890	HMF	breast:	n/a	n/a
24	CTCF	chr15:31747780-31747930	GM12872	blood:	n/a	n/a
25	CTCF	chr15:31747780-31747930	GM06990	blood:	n/a	n/a
26	CTCF	chr15:31747780-31747930	NHEK	skin:	n/a	n/a
27	CTCF	chr15:31747740-31747890	GM12866	blood:	n/a	n/a
28	CTCF	chr15:31747780-31747930	Hela-S3	cervix:	n/a	n/a
29	RAD21	chr15:31747699-31748143	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000259696	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6493668	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033571	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8034199	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8040885	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31734400-31750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:31741400-31747800	Weak transcription	GM12878-XiMat	blood
3	chr15:31741400-31749400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:31745600-31748800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:31745800-31748800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:31745800-31750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:31747000-31750800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:31747200-31748200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:31747400-31748200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:31747400-31748200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:31747400-31748200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:31747400-31748200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:31747600-31748000	Enhancers	Primary T cells from cord blood	blood
14	chr15:31747600-31748800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:31747600-31749000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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