Variant report
| Variant | rs7179932 |
|---|---|
| Chromosome Location | chr15:50691647-50691648 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:50689537..50691776-chr15:50694471..50696812,2 | K562 | blood: | |
| 2 | chr15:50691142..50692754-chr15:50698415..50700723,2 | MCF-7 | breast: | |
| 3 | chr15:50649884..50652739-chr15:50690181..50692263,2 | MCF-7 | breast: | |
| 4 | chr15:50690038..50692551-chr15:50716470..50719007,2 | MCF-7 | breast: | |
| 5 | chr15:50646659..50649812-chr15:50686170..50691655,5 | MCF-7 | breast: | |
| 6 | chr15:50689878..50691689-chr15:50693318..50695426,2 | MCF-7 | breast: | |
| 7 | chr15:50684853..50686825-chr15:50690971..50693142,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138592 | Chromatin interaction |
| ENSG00000264109 | Chromatin interaction |
| ENSG00000259715 | Chromatin interaction |
| ENSG00000244879 | Chromatin interaction |
| ENSG00000104064 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs16963660 | 0.86[AFR][1000 genomes] |
| rs16963682 | 0.81[AFR][1000 genomes] |
| rs56168794 | 0.83[AMR][1000 genomes] |
| rs6493437 | 0.98[AFR][1000 genomes] |
| rs7164445 | 0.83[AMR][1000 genomes] |
| rs7165393 | 0.83[AMR][1000 genomes] |
| rs7171027 | 0.83[AMR][1000 genomes] |
| rs7171975 | 0.83[AMR][1000 genomes] |
| rs7175357 | 0.83[AMR][1000 genomes] |
| rs8033370 | 0.98[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044277 | chr15:49921547-50702386 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542380 | chr15:49921547-50702386 | Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 3 | nsv1045456 | chr15:50592472-51019873 | Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 121 gene(s) | inside rSNPs | diseases |
| 4 | nsv948579 | chr15:50645530-51045564 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 5 | nsv524613 | chr15:50656449-50868779 | Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:50683800-50703800 | Weak transcription | K562 | blood |
| 2 | chr15:50686800-50699400 | Weak transcription | H9 Cell Line | embryonic stem cell |
