Variant report

Variant	rs7180084
Chromosome Location	chr15:34151668-34151669
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10519885	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072758	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477436	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1477437	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17817680	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17817692	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41279228	1.00[ASN][1000 genomes]
rs4780188	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4780189	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs61506923	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713201	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713203	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172206	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7183856	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025152	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs967124	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34090600-34151800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:34130800-34158600	Weak transcription	Brain Germinal Matrix	brain
4	chr15:34137400-34164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:34139800-34156400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:34139800-34164200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:34142400-34168600	Weak transcription	Esophagus	oesophagus
8	chr15:34143000-34165000	Weak transcription	Psoas Muscle	Psoas
9	chr15:34143400-34160400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:34143600-34164200	Weak transcription	Brain Angular Gyrus	brain
11	chr15:34143800-34156200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:34145000-34152200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:34145000-34152200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:34145000-34158200	Weak transcription	Gastric	stomach
15	chr15:34145000-34161200	Weak transcription	Small Intestine	intestine
16	chr15:34145200-34152200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:34145200-34152200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:34145200-34152200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:34145200-34152200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:34145200-34152200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:34145200-34152200	Weak transcription	HMEC	breast
22	chr15:34145400-34152200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:34145400-34152200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:34145400-34152800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:34145400-34156600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:34145600-34154200	Strong transcription	Fetal Muscle Leg	muscle
27	chr15:34145600-34158200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:34145600-34158600	Weak transcription	HSMM	muscle
29	chr15:34145800-34152800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:34145800-34152800	Weak transcription	Osteobl	bone
31	chr15:34145800-34153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:34145800-34158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:34146200-34153800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr15:34146400-34153200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr15:34146400-34158200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:34146600-34153600	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:34146800-34152600	Strong transcription	Brain Anterior Caudate	brain
38	chr15:34146800-34152800	Weak transcription	Hela-S3	cervix
39	chr15:34146800-34164000	Weak transcription	Right Ventricle	heart
40	chr15:34147200-34162400	Weak transcription	Pancreas	Pancrea
41	chr15:34147400-34164200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:34147600-34153000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:34148000-34153000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:34148400-34151800	Weak transcription	Primary T cells from cord blood	blood
45	chr15:34148400-34156600	Weak transcription	GM12878-XiMat	blood
46	chr15:34148600-34155600	Weak transcription	Brain Substantia Nigra	brain
47	chr15:34148600-34158400	Weak transcription	Ovary	ovary
48	chr15:34148600-34159400	Weak transcription	Lung	lung
49	chr15:34148800-34153000	Weak transcription	NHDF-Ad	bronchial
50	chr15:34149400-34152400	Weak transcription	NHEK	skin

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