Variant report

Variant	rs7180275
Chromosome Location	chr15:74672161-74672162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74667595..74674345-chr15:74676249..74682092,7	K562	blood:
2	chr15:74671949..74676409-chr15:74729449..74732504,7	MCF-7	breast:
3	chr15:74670802..74672739-chr15:74752255..74754847,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12438594	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16968477	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16968478	0.90[ASN][1000 genomes]
rs2073475	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28681535	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3935523	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077581	0.86[AFR][1000 genomes]
rs4077583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077584	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4077585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4555110	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4598865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60636222	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167038	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7181947	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74666600-74673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:74667200-74676400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:74667400-74673600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:74667400-74676800	Weak transcription	Colonic Mucosa	Colon
5	chr15:74667400-74691200	Enhancers	Placenta	Placenta
6	chr15:74667600-74673800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:74667600-74674000	Weak transcription	NHDF-Ad	bronchial
8	chr15:74667600-74674600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:74667600-74675600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:74667600-74675800	Weak transcription	A549	lung
11	chr15:74667600-74676000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:74667600-74677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74667600-74677600	Weak transcription	Right Atrium	heart
14	chr15:74667800-74674600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:74667800-74675000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:74667800-74676000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr15:74668000-74675000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:74668400-74672200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:74670800-74678600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:74671600-74672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:74671600-74673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:74671600-74674600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:74671600-74675800	Weak transcription	Esophagus	oesophagus
24	chr15:74671600-74676000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:74671800-74672200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:74671800-74672200	Enhancers	GM12878-XiMat	blood
27	chr15:74671800-74673000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:74671800-74673000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:74671800-74673000	Weak transcription	Osteobl	bone
30	chr15:74671800-74673600	Weak transcription	Fetal Thymus	thymus
31	chr15:74671800-74673600	Weak transcription	HSMMtube	muscle
32	chr15:74671800-74673600	Weak transcription	NHEK	skin
33	chr15:74671800-74673800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:74671800-74673800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:74671800-74673800	Weak transcription	NH-A	brain
36	chr15:74671800-74674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:74671800-74674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:74671800-74674600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:74671800-74674600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:74671800-74674600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:74671800-74674600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr15:74671800-74674600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:74671800-74674600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:74671800-74674600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:74671800-74674600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:74671800-74674600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:74671800-74674800	Weak transcription	Thymus	Thymus
48	chr15:74671800-74675000	Weak transcription	Spleen	Spleen
49	chr15:74671800-74675200	Weak transcription	Primary T cells from cord blood	blood
50	chr15:74671800-74675200	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links