Variant report

Variant	rs7180432
Chromosome Location	chr15:75148773-75148774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75135031..75137058-chr15:75147933..75151244,4	MCF-7	breast:
2	chr15:75133522..75136505-chr15:75147774..75151280,5	K562	blood:
3	chr15:75148024..75151438-chr15:75181657..75183712,3	MCF-7	breast:
4	chr15:75148295..75153393-chr15:75163740..75167147,7	MCF-7	breast:
5	chr15:75148229..75149989-chr15:75164182..75166936,2	K562	blood:

Variant related genes	Relation type
ENSG00000178802	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000140497	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1869959	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2290574	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305668	0.83[ASN][1000 genomes]
rs4886613	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886615	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs936228	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs936229	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs936230	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7180432	ULK3	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75155800	Weak transcription	NH-A	brain
2	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
4	chr15:75136400-75149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
6	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
7	chr15:75137000-75149800	Strong transcription	Fetal Stomach	stomach
8	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:75137400-75150600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:75140000-75150400	Strong transcription	Primary T cells from cord blood	blood
11	chr15:75143000-75149000	Weak transcription	Small Intestine	intestine
12	chr15:75143600-75163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:75145000-75160000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:75145400-75155200	Weak transcription	HMEC	breast
15	chr15:75145800-75149000	Weak transcription	Primary B cells from cord blood	blood
16	chr15:75146000-75158200	Weak transcription	NHLF	lung
17	chr15:75146000-75164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:75146200-75149200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:75146200-75149600	Weak transcription	A549	lung
20	chr15:75146200-75155600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:75146200-75163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:75146400-75149000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:75146400-75149400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:75146400-75155600	Weak transcription	Osteobl	bone
25	chr15:75146400-75155800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:75146400-75158400	Weak transcription	HUVEC	blood vessel
27	chr15:75146400-75160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:75146400-75161800	Weak transcription	Fetal Lung	lung
29	chr15:75146400-75163200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:75146600-75149000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:75146600-75149200	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:75146600-75149400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:75146600-75149400	Weak transcription	Brain Angular Gyrus	brain
34	chr15:75146600-75149400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:75146600-75149400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:75146600-75149400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:75146600-75149400	Weak transcription	Pancreas	Pancrea
38	chr15:75146600-75149400	Weak transcription	K562	blood
39	chr15:75146600-75149600	Weak transcription	HSMM	muscle
40	chr15:75146600-75159400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:75146600-75159400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:75146600-75160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:75146600-75163000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:75146600-75164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:75146800-75149200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:75146800-75149200	Weak transcription	HepG2	liver
47	chr15:75146800-75149200	Weak transcription	NHEK	skin
48	chr15:75146800-75149400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:75146800-75149400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:75146800-75149400	Weak transcription	Adipose Nuclei	Adipose

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