Variant report

Variant	rs7180659
Chromosome Location	chr15:39683011-39683012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs36058017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924349	0.86[ASN][1000 genomes]
rs7167226	0.81[ASN][1000 genomes]
rs8026954	0.83[ASN][1000 genomes]
rs8043207	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39677200-39684400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:39680600-39685000	Weak transcription	A549	lung
3	chr15:39681000-39684800	Weak transcription	Fetal Intestine Large	intestine
4	chr15:39681000-39684800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr15:39681000-39685400	Weak transcription	HepG2	liver
6	chr15:39681000-39688800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:39681000-39691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:39681200-39683200	Weak transcription	Fetal Heart	heart
9	chr15:39682400-39687800	Enhancers	Hela-S3	cervix
10	chr15:39682800-39683600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
11	chr15:39682800-39686800	Enhancers	NHEK	skin
12	chr15:39683000-39684200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:39683000-39684200	Enhancers	HMEC	breast
14	chr15:39683000-39684400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:39683000-39684600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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